Kladwang W - Search Results

1

Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.

Kappel K, Zhang K, Su Z, Watkins AM, Kladwang W, Li S, Pintilie G, Topkar VV, Rangan R, Zheludev IN, Yesselman JD, Chiu W, Das R. Kappel K, et al. Among authors: kladwang w. Nat Methods. 2020 Jul;17(7):699-707. doi: 10.1038/s41592-020-0878-9. Epub 2020 Jul 2. Nat Methods. 2020. PMID: 32616928 Free PMC article.

2

A mutate-and-map strategy for inferring base pairs in structured nucleic acids: proof of concept on a DNA/RNA helix.

Kladwang W, Das R. Kladwang W, et al. Biochemistry. 2010 Sep 7;49(35):7414-6. doi: 10.1021/bi101123g. Biochemistry. 2010. PMID: 20677780

3

A mutate-and-map strategy accurately infers the base pairs of a 35-nucleotide model RNA.

Kladwang W, Cordero P, Das R. Kladwang W, et al. RNA. 2011 Mar;17(3):522-34. doi: 10.1261/rna.2516311. Epub 2011 Jan 14. RNA. 2011. PMID: 21239468 Free PMC article.

4

HiTRACE: high-throughput robust analysis for capillary electrophoresis.

Yoon S, Kim J, Hum J, Kim H, Park S, Kladwang W, Das R. Yoon S, et al. Among authors: kladwang w. Bioinformatics. 2011 Jul 1;27(13):1798-805. doi: 10.1093/bioinformatics/btr277. Epub 2011 May 10. Bioinformatics. 2011. PMID: 21561922

5

Understanding the errors of SHAPE-directed RNA structure modeling.

Kladwang W, VanLang CC, Cordero P, Das R. Kladwang W, et al. Biochemistry. 2011 Sep 20;50(37):8049-56. doi: 10.1021/bi200524n. Epub 2011 Aug 25. Biochemistry. 2011. PMID: 21842868 Free PMC article.

6

A two-dimensional mutate-and-map strategy for non-coding RNA structure.

Kladwang W, VanLang CC, Cordero P, Das R. Kladwang W, et al. Nat Chem. 2011 Oct 30;3(12):954-62. doi: 10.1038/nchem.1176. Nat Chem. 2011. PMID: 22109276 Free PMC article.

7

An enumerative stepwise ansatz enables atomic-accuracy RNA loop modeling.

Sripakdeevong P, Kladwang W, Das R. Sripakdeevong P, et al. Among authors: kladwang w. Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20573-8. doi: 10.1073/pnas.1106516108. Epub 2011 Dec 5. Proc Natl Acad Sci U S A. 2011. PMID: 22143768 Free PMC article.

8

Automated RNA structure prediction uncovers a kink-turn linker in double glycine riboswitches.

Kladwang W, Chou FC, Das R. Kladwang W, et al. J Am Chem Soc. 2012 Jan 25;134(3):1404-7. doi: 10.1021/ja2093508. Epub 2012 Jan 12. J Am Chem Soc. 2012. PMID: 22192063

9

Ultraviolet shadowing of RNA can cause significant chemical damage in seconds.

Kladwang W, Hum J, Das R. Kladwang W, et al. Sci Rep. 2012;2:517. doi: 10.1038/srep00517. Epub 2012 Jul 18. Sci Rep. 2012. PMID: 22816040 Free PMC article.

10

Quantitative dimethyl sulfate mapping for automated RNA secondary structure inference.

Cordero P, Kladwang W, VanLang CC, Das R. Cordero P, et al. Among authors: kladwang w. Biochemistry. 2012 Sep 11;51(36):7037-9. doi: 10.1021/bi3008802. Epub 2012 Aug 29. Biochemistry. 2012. PMID: 22913637 Free PMC article.

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