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A comprehensive rat transcriptome built from large scale RNA-seq-based annotation.
Ji X, Li P, Fuscoe JC, Chen G, Xiao W, Shi L, Ning B, Liu Z, Hong H, Wu J, Liu J, Guo L, Kreil DP, Łabaj PP, Zhong L, Bao W, Huang Y, He J, Zhao Y, Tong W, Shi T. Ji X, et al. Among authors: wu j. Nucleic Acids Res. 2020 Sep 4;48(15):8320-8331. doi: 10.1093/nar/gkaa638. Nucleic Acids Res. 2020. PMID: 32749457 Free PMC article.
DNMIVD: DNA methylation interactive visualization database.
Ding W, Chen J, Feng G, Chen G, Wu J, Guo Y, Ni X, Shi T. Ding W, et al. Among authors: wu j. Nucleic Acids Res. 2020 Jan 8;48(D1):D856-D862. doi: 10.1093/nar/gkz830. Nucleic Acids Res. 2020. PMID: 31598709 Free PMC article.
AtMAD: Arabidopsis thaliana multi-omics association database.
Lan Y, Sun R, Ouyang J, Ding W, Kim MJ, Wu J, Li Y, Shi T. Lan Y, et al. Among authors: wu j. Nucleic Acids Res. 2021 Jan 8;49(D1):D1445-D1451. doi: 10.1093/nar/gkaa1042. Nucleic Acids Res. 2021. PMID: 33219693 Free PMC article.
Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association.
Wu J, Danko D, Afshinnekoo E, Bezdan D, Bhattacharyya M, Castro-Nallar E, Chmielarczyk A, Hazrin-Chong NH, Deng Y, Dias-Neto E, Frolova A, Mason-Buck G, Iraola G, Jang S, Łabaj P, Lee PKH, Nieto-Caballero M, Osuolale OO, Ouzounis CA, Perlin MH, Prithiviraj B, Rascovan N, Różańska A, Schriml LM, Semmler T, Suzuki H, Ugalde JA, Young B, Werner J, Zambrano MM, Zhao Y, Mason C, Shi T; MetaSUB Consortium. Wu J, et al. Environ Res. 2022 May 1;207:112183. doi: 10.1016/j.envres.2021.112183. Epub 2021 Oct 9. Environ Res. 2022. PMID: 34637759
A global metagenomic map of urban microbiomes and antimicrobial resistance.
Danko D, Bezdan D, Afshin EE, Ahsanuddin S, Bhattacharya C, Butler DJ, Chng KR, Donnellan D, Hecht J, Jackson K, Kuchin K, Karasikov M, Lyons A, Mak L, Meleshko D, Mustafa H, Mutai B, Neches RY, Ng A, Nikolayeva O, Nikolayeva T, Png E, Ryon KA, Sanchez JL, Shaaban H, Sierra MA, Thomas D, Young B, Abudayyeh OO, Alicea J, Bhattacharyya M, Blekhman R, Castro-Nallar E, Cañas AM, Chatziefthimiou AD, Crawford RW, De Filippis F, Deng Y, Desnues C, Dias-Neto E, Dybwad M, Elhaik E, Ercolini D, Frolova A, Gankin D, Gootenberg JS, Graf AB, Green DC, Hajirasouliha I, Hastings JJA, Hernandez M, Iraola G, Jang S, Kahles A, Kelly FJ, Knights K, Kyrpides NC, Łabaj PP, Lee PKH, Leung MHY, Ljungdahl PO, Mason-Buck G, McGrath K, Meydan C, Mongodin EF, Moraes MO, Nagarajan N, Nieto-Caballero M, Noushmehr H, Oliveira M, Ossowski S, Osuolale OO, Özcan O, Paez-Espino D, Rascovan N, Richard H, Rätsch G, Schriml LM, Semmler T, Sezerman OU, Shi L, Shi T, Siam R, Song LH, Suzuki H, Court DS, Tighe SW, Tong X, Udekwu KI, Ugalde JA, Valentine B, Vassilev DI, Vayndorf EM, Velavan TP, Wu J, Zambrano MM, Zhu J, Zhu S, Mason CE; International MetaSUB Consortium. Danko D, et al. Among authors: wu j. Cell. 2021 Jun 24;184(13):3376-3393.e17. doi: 10.1016/j.cell.2021.05.002. Epub 2021 May 26. Cell. 2021. PMID: 34043940 Free PMC article.
Intra-host dynamics of Ebola virus during 2014.
Ni M, Chen C, Qian J, Xiao HX, Shi WF, Luo Y, Wang HY, Li Z, Wu J, Xu PS, Chen SH, Wong G, Bi Y, Xia ZP, Li W, Lu HJ, Ma J, Tong YG, Zeng H, Wang SQ, Gao GF, Bo XC, Liu D. Ni M, et al. Among authors: wu j. Nat Microbiol. 2016 Sep 5;1(11):16151. doi: 10.1038/nmicrobiol.2016.151. Nat Microbiol. 2016. PMID: 27595345
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