Liu Y - Search Results

1

aPRBind: protein-RNA interface prediction by combining sequence and I-TASSER model-based structural features learned with convolutional neural networks.

Liu Y, Gong W, Zhao Y, Deng X, Zhang S, Li C. Liu Y, et al. Bioinformatics. 2021 May 17;37(7):937-942. doi: 10.1093/bioinformatics/btaa747. Bioinformatics. 2021. PMID: 32821925

2

LNETWORK: an efficient and effective method for constructing phylogenetic networks.

Wang J, Guo M, Liu X, Liu Y, Wang C, Xing L, Che K. Wang J, et al. Among authors: liu y, liu x. Bioinformatics. 2013 Sep 15;29(18):2269-76. doi: 10.1093/bioinformatics/btt378. Epub 2013 Jun 29. Bioinformatics. 2013. PMID: 23811095

3

Inferring the soybean (Glycine max) microRNA functional network based on target gene network.

Xu Y, Guo M, Liu X, Wang C, Liu Y. Xu Y, et al. Among authors: liu y, liu x. Bioinformatics. 2014 Jan 1;30(1):94-103. doi: 10.1093/bioinformatics/btt605. Epub 2013 Oct 22. Bioinformatics. 2014. PMID: 24149053

4

Equally Weighted Multiscale Elastic Network Model and Its Comparison with Traditional and Parameter-Free Models.

Gong W, Liu Y, Zhao Y, Wang S, Han Z, Li C. Gong W, et al. Among authors: liu y. J Chem Inf Model. 2021 Feb 22;61(2):921-937. doi: 10.1021/acs.jcim.0c01178. Epub 2021 Jan 26. J Chem Inf Model. 2021. PMID: 33496590

5

EDLMFC: an ensemble deep learning framework with multi-scale features combination for ncRNA-protein interaction prediction.

Wang J, Zhao Y, Gong W, Liu Y, Wang M, Huang X, Tan J. Wang J, et al. Among authors: liu y. BMC Bioinformatics. 2021 Mar 19;22(1):133. doi: 10.1186/s12859-021-04069-9. BMC Bioinformatics. 2021. PMID: 33740884 Free PMC article.

6

Insight into Shared Properties and Differential Dynamics and Specificity of Secretory Phospholipase A₂ Family Members.

Zhang S, Gong W, Han Z, Liu Y, Li C. Zhang S, et al. Among authors: liu y. J Phys Chem B. 2021 Apr 8;125(13):3353-3363. doi: 10.1021/acs.jpcb.1c01315. Epub 2021 Mar 29. J Phys Chem B. 2021. PMID: 33780247

7

An ensemble approach to predict binding hotspots in protein-RNA interactions based on SMOTE data balancing and Random Grouping feature selection strategies.

Zhou T, Rong J, Liu Y, Gong W, Li C. Zhou T, et al. Among authors: liu y. Bioinformatics. 2022 Apr 28;38(9):2452-2458. doi: 10.1093/bioinformatics/btac138. Bioinformatics. 2022. PMID: 35253843

8

Predicting miRNA-disease associations via learning multimodal networks and fusing mixed neighborhood information.

Lou Z, Cheng Z, Li H, Teng Z, Liu Y, Tian Z. Lou Z, et al. Among authors: liu y. Brief Bioinform. 2022 Sep 20;23(5):bbac159. doi: 10.1093/bib/bbac159. Brief Bioinform. 2022. PMID: 35524503

9

Equivariant score-based generative diffusion framework for 3D molecules.

Zhang H, Liu Y, Liu X, Wang C, Guo M. Zhang H, et al. Among authors: liu y, liu x. BMC Bioinformatics. 2024 May 30;25(1):203. doi: 10.1186/s12859-024-05810-w. BMC Bioinformatics. 2024. PMID: 38816718 Free PMC article.

10

Predicting RNA secondary structure based on the class information and Hopfield network.

Zou Q, Zhao T, Liu Y, Guo M. Zou Q, et al. Among authors: liu y. Comput Biol Med. 2009 Mar;39(3):206-14. doi: 10.1016/j.compbiomed.2008.12.010. Epub 2009 Feb 11. Comput Biol Med. 2009. PMID: 19215914

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