Wei G - Search Results

1

Structural cavities are critical to balancing stability and activity of a membrane-integral enzyme.

Guo R, Cang Z, Yao J, Kim M, Deans E, Wei G, Kang SG, Hong H. Guo R, et al. Among authors: wei g. Proc Natl Acad Sci U S A. 2020 Sep 8;117(36):22146-22156. doi: 10.1073/pnas.1917770117. Epub 2020 Aug 26. Proc Natl Acad Sci U S A. 2020. PMID: 32848056 Free PMC article.

2

Integration of element specific persistent homology and machine learning for protein-ligand binding affinity prediction.

Cang Z, Wei GW. Cang Z, et al. Int J Numer Method Biomed Eng. 2018 Feb;34(2). doi: 10.1002/cnm.2914. Epub 2017 Aug 16. Int J Numer Method Biomed Eng. 2018. PMID: 28677268

3

TopologyNet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictions.

Cang Z, Wei GW. Cang Z, et al. PLoS Comput Biol. 2017 Jul 27;13(7):e1005690. doi: 10.1371/journal.pcbi.1005690. eCollection 2017 Jul. PLoS Comput Biol. 2017. PMID: 28749969 Free PMC article.

4

Analysis and prediction of protein folding energy changes upon mutation by element specific persistent homology.

Cang Z, Wei GW. Cang Z, et al. Bioinformatics. 2017 Nov 15;33(22):3549-3557. doi: 10.1093/bioinformatics/btx460. Bioinformatics. 2017. PMID: 29036440

5

Representability of algebraic topology for biomolecules in machine learning based scoring and virtual screening.

Cang Z, Mu L, Wei GW. Cang Z, et al. PLoS Comput Biol. 2018 Jan 8;14(1):e1005929. doi: 10.1371/journal.pcbi.1005929. eCollection 2018 Jan. PLoS Comput Biol. 2018. PMID: 29309403 Free PMC article.

6

Mathematical deep learning for pose and binding affinity prediction and ranking in D3R Grand Challenges.

Nguyen DD, Cang Z, Wu K, Wang M, Cao Y, Wei GW. Nguyen DD, et al. J Comput Aided Mol Des. 2019 Jan;33(1):71-82. doi: 10.1007/s10822-018-0146-6. Epub 2018 Aug 16. J Comput Aided Mol Des. 2019. PMID: 30116918 Free PMC article.

7

Protein pocket detection via convex hull surface evolution and associated Reeb graph.

Zhao R, Cang Z, Tong Y, Wei GW. Zhao R, et al. Bioinformatics. 2018 Sep 1;34(17):i830-i837. doi: 10.1093/bioinformatics/bty598. Bioinformatics. 2018. PMID: 30423105 Free PMC article.

8

A review of mathematical representations of biomolecular data.

Nguyen DD, Cang Z, Wei GW. Nguyen DD, et al. Phys Chem Chem Phys. 2020 Feb 26;22(8):4343-4367. doi: 10.1039/c9cp06554g. Phys Chem Chem Phys. 2020. PMID: 32067019 Free PMC article. Review.

9

A topology-based network tree for the prediction of protein-protein binding affinity changes following mutation.

Wang M, Cang Z, Wei GW. Wang M, et al. Nat Mach Intell. 2020;2(2):116-123. doi: 10.1038/s42256-020-0149-6. Epub 2020 Feb 14. Nat Mach Intell. 2020. PMID: 34170981 Free PMC article.

10

Evolutionary homology on coupled dynamical systems with applications to protein flexibility analysis.

Cang Z, Munch E, Wei GW. Cang Z, et al. J Appl Comput Topol. 2020 Dec;4(4):481-507. doi: 10.1007/s41468-020-00057-9. Epub 2020 Jul 29. J Appl Comput Topol. 2020. PMID: 34179350 Free PMC article.

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