Zelikovsky A - Search Results

1

Author Correction: Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing.

Mandric I, Rotman J, Yang HT, Strauli N, Montoya DJ, Van Der Wey W, Ronas JR, Statz B, Yao D, Petrova V, Zelikovsky A, Spreafico R, Shifman S, Zaitlen N, Rossetti M, Ansel KM, Eskin E, Mangul S. Mandric I, et al. Among authors: zelikovsky a. Nat Commun. 2020 Sep 4;11(1):4499. doi: 10.1038/s41467-020-18509-2. Nat Commun. 2020. PMID: 32887888 Free PMC article.

2

Special Issue: 11th International Computational Advances in Bio and Medical Sciences (ICCABS 2021).

Bansal MS, Măndoiu II, Moussa M, Patterson M, Rajasekaran S, Skums P, Zelikovsky A. Bansal MS, et al. Among authors: zelikovsky a. J Comput Biol. 2023 Apr;30(4):363-365. doi: 10.1089/cmb.2023.29085.msb. Epub 2023 Feb 27. J Comput Biol. 2023. PMID: 36847353 Free PMC article. No abstract available.

3

Estimation of alternative splicing isoform frequencies from RNA-Seq data.

Nicolae M, Mangul S, Măndoiu II, Zelikovsky A. Nicolae M, et al. Among authors: zelikovsky a. Algorithms Mol Biol. 2011 Apr 19;6(1):9. doi: 10.1186/1748-7188-6-9. Algorithms Mol Biol. 2011. PMID: 21504602 Free PMC article.

4

Inferring viral quasispecies spectra from 454 pyrosequencing reads.

Astrovskaya I, Tork B, Mangul S, Westbrooks K, Măndoiu I, Balfe P, Zelikovsky A. Astrovskaya I, et al. Among authors: zelikovsky a. BMC Bioinformatics. 2011;12 Suppl 6(Suppl 6):S1. doi: 10.1186/1471-2105-12-S6-S1. Epub 2011 Jul 28. BMC Bioinformatics. 2011. PMID: 21989211 Free PMC article.

5

Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations.

Mangul S, Caciula A, Glebova O, Mandoiu I, Zelikovsky A. Mangul S, et al. Among authors: zelikovsky a. In Silico Biol. 2011-2012;11(5-6):251-61. doi: 10.3233/ISB-2012-0459. In Silico Biol. 2011. PMID: 23202426

6

Accurate viral population assembly from ultra-deep sequencing data.

Mangul S, Wu NC, Mancuso N, Zelikovsky A, Sun R, Eskin E. Mangul S, et al. Among authors: zelikovsky a. Bioinformatics. 2014 Jun 15;30(12):i329-37. doi: 10.1093/bioinformatics/btu295. Bioinformatics. 2014. PMID: 24932001 Free PMC article.

7

ScaffMatch: scaffolding algorithm based on maximum weight matching.

Mandric I, Zelikovsky A. Mandric I, et al. Among authors: zelikovsky a. Bioinformatics. 2015 Aug 15;31(16):2632-8. doi: 10.1093/bioinformatics/btv211. Epub 2015 Apr 17. Bioinformatics. 2015. PMID: 25890305

8

Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants.

Artyomenko A, Wu NC, Mangul S, Eskin E, Sun R, Zelikovsky A. Artyomenko A, et al. Among authors: zelikovsky a. J Comput Biol. 2017 Jun;24(6):558-570. doi: 10.1089/cmb.2016.0146. Epub 2016 Nov 30. J Comput Biol. 2017. PMID: 27901586 Free PMC article.

9

Fast bootstrapping-based estimation of confidence intervals of expression levels and differential expression from RNA-Seq data.

Mandric I, Temate-Tiagueu Y, Shcheglova T, Al Seesi S, Zelikovsky A, Mandoiu II. Mandric I, et al. Among authors: zelikovsky a. Bioinformatics. 2017 Oct 15;33(20):3302-3304. doi: 10.1093/bioinformatics/btx365. Bioinformatics. 2017. PMID: 28605502

10

Repeat-aware evaluation of scaffolding tools.

Mandric I, Knyazev S, Zelikovsky A. Mandric I, et al. Among authors: zelikovsky a. Bioinformatics. 2018 Aug 1;34(15):2530-2537. doi: 10.1093/bioinformatics/bty131. Bioinformatics. 2018. PMID: 29547882 Free PMC article.

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