McDonald D - Search Results

1

Nutrition and the Gut Microbiota in 10- to 18-Month-Old Children Living in Urban Slums of Mumbai, India.

Huey SL, Jiang L, Fedarko MW, McDonald D, Martino C, Ali F, Russell DG, Udipi SA, Thorat A, Thakker V, Ghugre P, Potdar RD, Chopra H, Rajagopalan K, Haas JD, Finkelstein JL, Knight R, Mehta S. Huey SL, et al. Among authors: mcdonald d. mSphere. 2020 Sep 23;5(5):e00731-20. doi: 10.1128/mSphere.00731-20. mSphere. 2020. PMID: 32968008 Free PMC article.

2

Microbial community resemblance methods differ in their ability to detect biologically relevant patterns.

Kuczynski J, Liu Z, Lozupone C, McDonald D, Fierer N, Knight R. Kuczynski J, et al. Among authors: mcdonald d. Nat Methods. 2010 Oct;7(10):813-9. doi: 10.1038/nmeth.1499. Epub 2010 Sep 5. Nat Methods. 2010. PMID: 20818378 Free PMC article.

3

Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins.

Hansen EE, Lozupone CA, Rey FE, Wu M, Guruge JL, Narra A, Goodfellow J, Zaneveld JR, McDonald DT, Goodrich JA, Heath AC, Knight R, Gordon JI. Hansen EE, et al. Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1(Suppl 1):4599-606. doi: 10.1073/pnas.1000071108. Epub 2011 Feb 11. Proc Natl Acad Sci U S A. 2011. PMID: 21317366 Free PMC article.

4

Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat.

Harris JK, Caporaso JG, Walker JJ, Spear JR, Gold NJ, Robertson CE, Hugenholtz P, Goodrich J, McDonald D, Knights D, Marshall P, Tufo H, Knight R, Pace NR. Harris JK, et al. Among authors: mcdonald d. ISME J. 2013 Jan;7(1):50-60. doi: 10.1038/ismej.2012.79. Epub 2012 Jul 26. ISME J. 2013. PMID: 22832344 Free PMC article.

5

From molecules to dynamic biological communities.

McDonald D, Vázquez-Baeza Y, Walters WA, Caporaso JG, Knight R. McDonald D, et al. Biol Philos. 2013 Mar;28(2):241-259. doi: 10.1007/s10539-013-9364-4. Epub 2013 Feb 5. Biol Philos. 2013. PMID: 23483075 Free PMC article.

6

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences.

Langille MG, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, Clemente JC, Burkepile DE, Vega Thurber RL, Knight R, Beiko RG, Huttenhower C. Langille MG, et al. Among authors: mcdonald d. Nat Biotechnol. 2013 Sep;31(9):814-21. doi: 10.1038/nbt.2676. Epub 2013 Aug 25. Nat Biotechnol. 2013. PMID: 23975157 Free PMC article.

7

Comparison of the vaginal microbial communities in women with recurrent genital HSV receiving acyclovir intravaginal rings.

Ursell LK, Gunawardana M, Chang S, Mullen M, Moss JA, Herold BC, Keller MJ, McDonald D, González A, Knight R, Baum MM. Ursell LK, et al. Among authors: mcdonald d. Antiviral Res. 2014 Feb;102:87-94. doi: 10.1016/j.antiviral.2013.12.004. Epub 2013 Dec 19. Antiviral Res. 2014. PMID: 24361269 Free PMC article.

8

Rethinking "enterotypes".

Knights D, Ward TL, McKinlay CE, Miller H, Gonzalez A, McDonald D, Knight R. Knights D, et al. Among authors: mcdonald d. Cell Host Microbe. 2014 Oct 8;16(4):433-7. doi: 10.1016/j.chom.2014.09.013. Cell Host Microbe. 2014. PMID: 25299329 Free PMC article.

9

Towards large-cohort comparative studies to define the factors influencing the gut microbial community structure of ASD patients.

McDonald D, Hornig M, Lozupone C, Debelius J, Gilbert JA, Knight R. McDonald D, et al. Microb Ecol Health Dis. 2015 Mar 9;26:26555. doi: 10.3402/mehd.v26.26555. eCollection 2015. Microb Ecol Health Dis. 2015. PMID: 25758371 Free PMC article.

10

Ribosomal RNA, the lens into life.

McDonald D, Xu Z, Hyde ER, Knight R. McDonald D, et al. RNA. 2015 Apr;21(4):692-4. doi: 10.1261/rna.050799.115. RNA. 2015. PMID: 25780194 Free PMC article. No abstract available.

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