Zhu Y - Search Results

1

Scalable Bayesian Nonparametric Clustering and Classification.

Ni Y, Müller P, Diesendruck M, Williamson S, Zhu Y, Ji Y. Ni Y, et al. Among authors: zhu y. J Comput Graph Stat. 2020;29(1):53-65. doi: 10.1080/10618600.2019.1624366. Epub 2019 Jul 19. J Comput Graph Stat. 2020. PMID: 32982129 Free PMC article.

2

A Nonparametric Bayesian Model for Local Clustering with Application to Proteomics.

Lee J, Müller P, Zhu Y, Ji Y. Lee J, et al. Among authors: zhu y. J Am Stat Assoc. 2013 Jan 1;108(503):10.1080/01621459.2013.784705. doi: 10.1080/01621459.2013.784705. J Am Stat Assoc. 2013. PMID: 24222928 Free PMC article.

3

TCGA-assembler: open-source software for retrieving and processing TCGA data.

Zhu Y, Qiu P, Ji Y. Zhu Y, et al. Nat Methods. 2014 Jun;11(6):599-600. doi: 10.1038/nmeth.2956. Nat Methods. 2014. PMID: 24874569 Free PMC article. No abstract available.

4

Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data.

Zhu Y, Xu Y, Helseth DL Jr, Gulukota K, Yang S, Pesce LL, Mitra R, Müller P, Sengupta S, Guo W, Silverstein JC, Foster I, Parsad N, White KP, Ji Y. Zhu Y, et al. J Natl Cancer Inst. 2015 May 8;107(8):djv129. doi: 10.1093/jnci/djv129. Print 2015 Aug. J Natl Cancer Inst. 2015. PMID: 25956356 Free PMC article.

5

A Bayesian hierarchical model for inference across related reverse phase protein arrays experiments.

Mitra R, Müller P, Ji Y, Zhu Y, Mills G, Lu Y. Mitra R, et al. Among authors: zhu y. J Appl Stat. 2014;41(11):2483-2492. doi: 10.1080/02664763.2014.920776. J Appl Stat. 2014. PMID: 26246652 Free PMC article.

6

Ultra-fast local-haplotype variant calling using paired-end DNA-sequencing data reveals somatic mosaicism in tumor and normal blood samples.

Sengupta S, Gulukota K, Zhu Y, Ober C, Naughton K, Wentworth-Sheilds W, Ji Y. Sengupta S, et al. Among authors: zhu y. Nucleic Acids Res. 2016 Feb 18;44(3):e25. doi: 10.1093/nar/gkv953. Epub 2015 Sep 29. Nucleic Acids Res. 2016. PMID: 26420835 Free PMC article.

7

A Nonparametric Bayesian Model for Nested Clustering.

Lee J, Müller P, Zhu Y, Ji Y. Lee J, et al. Among authors: zhu y. Methods Mol Biol. 2016;1362:129-41. doi: 10.1007/978-1-4939-3106-4_8. Methods Mol Biol. 2016. PMID: 26519174

8

Using computer-extracted image phenotypes from tumors on breast magnetic resonance imaging to predict breast cancer pathologic stage.

Burnside ES, Drukker K, Li H, Bonaccio E, Zuley M, Ganott M, Net JM, Sutton EJ, Brandt KR, Whitman GJ, Conzen SD, Lan L, Ji Y, Zhu Y, Jaffe CC, Huang EP, Freymann JB, Kirby JS, Morris EA, Giger ML. Burnside ES, et al. Among authors: zhu y. Cancer. 2016 Mar 1;122(5):748-57. doi: 10.1002/cncr.29791. Epub 2015 Nov 30. Cancer. 2016. PMID: 26619259 Free PMC article.

9

Characterizing Cancer-Specific Networks by Integrating TCGA Data.

Xu Y, Zhu Y, Müller P, Mitra R, Ji Y. Xu Y, et al. Among authors: zhu y. Cancer Inform. 2015 Nov 23;13(Suppl 2):125-31. doi: 10.4137/CIN.S13776. eCollection 2014. Cancer Inform. 2015. PMID: 26628858 Free PMC article.

10

Deciphering Genomic Underpinnings of Quantitative MRI-based Radiomic Phenotypes of Invasive Breast Carcinoma.

Zhu Y, Li H, Guo W, Drukker K, Lan L, Giger ML, Ji Y. Zhu Y, et al. Sci Rep. 2015 Dec 7;5:17787. doi: 10.1038/srep17787. Sci Rep. 2015. PMID: 26639025 Free PMC article.

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