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Reproducibility across single-cell RNA-seq protocols for spatial ordering analysis.
Seirup M, Chu LF, Sengupta S, Leng N, Browder H, Kapadia K, Shafer CM, Duffin B, Elwell AL, Bolin JM, Swanson S, Stewart R, Kendziorski C, Thomson JA, Bacher R. Seirup M, et al. Among authors: thomson ja. PLoS One. 2020 Sep 28;15(9):e0239711. doi: 10.1371/journal.pone.0239711. eCollection 2020. PLoS One. 2020. PMID: 32986734 Free PMC article.
RNA-Seq gene expression estimation with read mapping uncertainty.
Li B, Ruotti V, Stewart RM, Thomson JA, Dewey CN. Li B, et al. Among authors: thomson ja. Bioinformatics. 2010 Feb 15;26(4):493-500. doi: 10.1093/bioinformatics/btp692. Epub 2009 Dec 18. Bioinformatics. 2010. PMID: 20022975 Free PMC article.
Chemically defined conditions for human iPSC derivation and culture.
Chen G, Gulbranson DR, Hou Z, Bolin JM, Ruotti V, Probasco MD, Smuga-Otto K, Howden SE, Diol NR, Propson NE, Wagner R, Lee GO, Antosiewicz-Bourget J, Teng JM, Thomson JA. Chen G, et al. Among authors: thomson ja. Nat Methods. 2011 May;8(5):424-9. doi: 10.1038/nmeth.1593. Epub 2011 Apr 10. Nat Methods. 2011. PMID: 21478862 Free PMC article.
Proteomic and phosphoproteomic comparison of human ES and iPS cells.
Phanstiel DH, Brumbaugh J, Wenger CD, Tian S, Probasco MD, Bailey DJ, Swaney DL, Tervo MA, Bolin JM, Ruotti V, Stewart R, Thomson JA, Coon JJ. Phanstiel DH, et al. Among authors: thomson ja. Nat Methods. 2011 Sep 11;8(10):821-7. doi: 10.1038/nmeth.1699. Nat Methods. 2011. PMID: 21983960 Free PMC article.
672 results