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SARS-CoV-2 spike protein predicted to form complexes with host receptor protein orthologues from a broad range of mammals.
Lam SD, Bordin N, Waman VP, Scholes HM, Ashford P, Sen N, van Dorp L, Rauer C, Dawson NL, Pang CSM, Abbasian M, Sillitoe I, Edwards SJL, Fraternali F, Lees JG, Santini JM, Orengo CA. Lam SD, et al. Among authors: bordin n. Sci Rep. 2020 Oct 5;10(1):16471. doi: 10.1038/s41598-020-71936-5. Sci Rep. 2020. PMID: 33020502 Free PMC article.
CATH: increased structural coverage of functional space.
Sillitoe I, Bordin N, Dawson N, Waman VP, Ashford P, Scholes HM, Pang CSM, Woodridge L, Rauer C, Sen N, Abbasian M, Le Cornu S, Lam SD, Berka K, Varekova IH, Svobodova R, Lees J, Orengo CA. Sillitoe I, et al. Among authors: bordin n. Nucleic Acids Res. 2021 Jan 8;49(D1):D266-D273. doi: 10.1093/nar/gkaa1079. Nucleic Acids Res. 2021. PMID: 33237325 Free PMC article.
Contrastive learning on protein embeddings enlightens midnight zone.
Heinzinger M, Littmann M, Sillitoe I, Bordin N, Orengo C, Rost B. Heinzinger M, et al. Among authors: bordin n. NAR Genom Bioinform. 2022 Jun 11;4(2):lqac043. doi: 10.1093/nargab/lqac043. eCollection 2022 Jun. NAR Genom Bioinform. 2022. PMID: 35702380 Free PMC article.
Novel machine learning approaches revolutionize protein knowledge.
Bordin N, Dallago C, Heinzinger M, Kim S, Littmann M, Rauer C, Steinegger M, Rost B, Orengo C. Bordin N, et al. Trends Biochem Sci. 2023 Apr;48(4):345-359. doi: 10.1016/j.tibs.2022.11.001. Epub 2022 Dec 9. Trends Biochem Sci. 2023. PMID: 36504138 Free PMC article. Review.
34 results