Sen N - Search Results

1

SARS-CoV-2 spike protein predicted to form complexes with host receptor protein orthologues from a broad range of mammals.

Lam SD, Bordin N, Waman VP, Scholes HM, Ashford P, Sen N, van Dorp L, Rauer C, Dawson NL, Pang CSM, Abbasian M, Sillitoe I, Edwards SJL, Fraternali F, Lees JG, Santini JM, Orengo CA. Lam SD, et al. Among authors: sen n. Sci Rep. 2020 Oct 5;10(1):16471. doi: 10.1038/s41598-020-71936-5. Sci Rep. 2020. PMID: 33020502 Free PMC article.

2

CATH functional families predict functional sites in proteins.

Das S, Scholes HM, Sen N, Orengo C. Das S, et al. Among authors: sen n. Bioinformatics. 2021 May 23;37(8):1099-1106. doi: 10.1093/bioinformatics/btaa937. Bioinformatics. 2021. PMID: 33135053 Free PMC article.

3

CATH: increased structural coverage of functional space.

Sillitoe I, Bordin N, Dawson N, Waman VP, Ashford P, Scholes HM, Pang CSM, Woodridge L, Rauer C, Sen N, Abbasian M, Le Cornu S, Lam SD, Berka K, Varekova IH, Svobodova R, Lees J, Orengo CA. Sillitoe I, et al. Among authors: sen n. Nucleic Acids Res. 2021 Jan 8;49(D1):D266-D273. doi: 10.1093/nar/gkaa1079. Nucleic Acids Res. 2021. PMID: 33237325 Free PMC article.

4

The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies.

Waman VP, Sen N, Varadi M, Daina A, Wodak SJ, Zoete V, Velankar S, Orengo C. Waman VP, et al. Among authors: sen n. Brief Bioinform. 2021 Mar 22;22(2):742-768. doi: 10.1093/bib/bbaa362. Brief Bioinform. 2021. PMID: 33348379 Free PMC article. Review.

5

Computational approaches to predict protein functional families and functional sites.

Rauer C, Sen N, Waman VP, Abbasian M, Orengo CA. Rauer C, et al. Among authors: sen n. Curr Opin Struct Biol. 2021 Oct;70:108-122. doi: 10.1016/j.sbi.2021.05.012. Epub 2021 Jul 2. Curr Opin Struct Biol. 2021. PMID: 34225010 Review.

6

Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs.

Sen N, Anishchenko I, Bordin N, Sillitoe I, Velankar S, Baker D, Orengo C. Sen N, et al. Brief Bioinform. 2022 Jul 18;23(4):bbac187. doi: 10.1093/bib/bbac187. Brief Bioinform. 2022. PMID: 35641150 Free PMC article.

7

CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models.

Nallapareddy V, Bordin N, Sillitoe I, Heinzinger M, Littmann M, Waman VP, Sen N, Rost B, Orengo C. Nallapareddy V, et al. Among authors: sen n. Bioinformatics. 2023 Jan 1;39(1):btad029. doi: 10.1093/bioinformatics/btad029. Bioinformatics. 2023. PMID: 36648327 Free PMC article.

8

AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms.

Bordin N, Sillitoe I, Nallapareddy V, Rauer C, Lam SD, Waman VP, Sen N, Heinzinger M, Littmann M, Kim S, Velankar S, Steinegger M, Rost B, Orengo C. Bordin N, et al. Among authors: sen n. Commun Biol. 2023 Feb 8;6(1):160. doi: 10.1038/s42003-023-04488-9. Commun Biol. 2023. PMID: 36755055 Free PMC article.

9

Protein diversification through post-translational modifications, alternative splicing, and gene duplication.

Goldtzvik Y, Sen N, Lam SD, Orengo C. Goldtzvik Y, et al. Among authors: sen n. Curr Opin Struct Biol. 2023 Aug;81:102640. doi: 10.1016/j.sbi.2023.102640. Epub 2023 Jun 23. Curr Opin Struct Biol. 2023. PMID: 37354790 Free article. Review.

10

Predicting human and viral protein variants affecting COVID-19 susceptibility and repurposing therapeutics.

Waman VP, Ashford P, Lam SD, Sen N, Abbasian M, Woodridge L, Goldtzvik Y, Bordin N, Wu J, Sillitoe I, Orengo CA. Waman VP, et al. Among authors: sen n. Sci Rep. 2024 Jun 20;14(1):14208. doi: 10.1038/s41598-024-61541-1. Sci Rep. 2024. PMID: 38902252 Free PMC article.

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