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Ultrafast Sample Placement on Existing Trees (UShER) Empowers Real-Time Phylogenetics for the SARS-CoV-2 Pandemic.
Turakhia Y, Thornlow B, Hinrichs AS, De Maio N, Gozashti L, Lanfear R, Haussler D, Corbett-Detig R. Turakhia Y, et al. Among authors: gozashti l. bioRxiv [Preprint]. 2020 Sep 28:2020.09.26.314971. doi: 10.1101/2020.09.26.314971. bioRxiv. 2020. Update in: Nat Genet. 2021 Jun;53(6):809-816. doi: 10.1038/s41588-021-00862-7 PMID: 33024970 Free PMC article. Updated. Preprint.
Stability of SARS-CoV-2 phylogenies.
Turakhia Y, De Maio N, Thornlow B, Gozashti L, Lanfear R, Walker CR, Hinrichs AS, Fernandes JD, Borges R, Slodkowicz G, Weilguny L, Haussler D, Goldman N, Corbett-Detig R. Turakhia Y, et al. Among authors: gozashti l. PLoS Genet. 2020 Nov 18;16(11):e1009175. doi: 10.1371/journal.pgen.1009175. eCollection 2020 Nov. PLoS Genet. 2020. PMID: 33206635 Free PMC article.
Shortcomings of SARS-CoV-2 genomic metadata.
Gozashti L, Corbett-Detig R. Gozashti L, et al. BMC Res Notes. 2021 May 17;14(1):189. doi: 10.1186/s13104-021-05605-9. BMC Res Notes. 2021. PMID: 34001211 Free PMC article.
Transposable elements drive intron gain in diverse eukaryotes.
Gozashti L, Roy SW, Thornlow B, Kramer A, Ares M Jr, Corbett-Detig R. Gozashti L, et al. Proc Natl Acad Sci U S A. 2022 Nov 29;119(48):e2209766119. doi: 10.1073/pnas.2209766119. Epub 2022 Nov 23. Proc Natl Acad Sci U S A. 2022. PMID: 36417430 Free PMC article.