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Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity.
Fang X, Vázquez-Baeza Y, Elijah E, Vargas F, Ackermann G, Humphrey G, Lau R, Weldon KC, Sanders JG, Panitchpakdi M, Carpenter C, Jarmusch AK, Neill J, Miralles A, Dulai P, Singh S, Tsai M, Swafford AD, Smarr L, Boyle DL, Palsson BO, Chang JT, Dorrestein PC, Sandborn WJ, Knight R, Boland BS. Fang X, et al. Inflamm Bowel Dis. 2021 Apr 15;27(5):603-616. doi: 10.1093/ibd/izaa262. Inflamm Bowel Dis. 2021. PMID: 33026068 Free PMC article.
Meta-analyses of studies of the human microbiota.
Lozupone CA, Stombaugh J, Gonzalez A, Ackermann G, Wendel D, Vázquez-Baeza Y, Jansson JK, Gordon JI, Knight R. Lozupone CA, et al. Genome Res. 2013 Oct;23(10):1704-14. doi: 10.1101/gr.151803.112. Epub 2013 Jul 16. Genome Res. 2013. PMID: 23861384 Free PMC article.
Advancing our understanding of the human microbiome using QIIME.
Navas-Molina JA, Peralta-Sánchez JM, González A, McMurdie PJ, Vázquez-Baeza Y, Xu Z, Ursell LK, Lauber C, Zhou H, Song SJ, Huntley J, Ackermann GL, Berg-Lyons D, Holmes S, Caporaso JG, Knight R. Navas-Molina JA, et al. Methods Enzymol. 2013;531:371-444. doi: 10.1016/B978-0-12-407863-5.00019-8. Methods Enzymol. 2013. PMID: 24060131 Free PMC article.
The treatment-naive microbiome in new-onset Crohn's disease.
Gevers D, Kugathasan S, Denson LA, Vázquez-Baeza Y, Van Treuren W, Ren B, Schwager E, Knights D, Song SJ, Yassour M, Morgan XC, Kostic AD, Luo C, González A, McDonald D, Haberman Y, Walters T, Baker S, Rosh J, Stephens M, Heyman M, Markowitz J, Baldassano R, Griffiths A, Sylvester F, Mack D, Kim S, Crandall W, Hyams J, Huttenhower C, Knight R, Xavier RJ. Gevers D, et al. Cell Host Microbe. 2014 Mar 12;15(3):382-392. doi: 10.1016/j.chom.2014.02.005. Cell Host Microbe. 2014. PMID: 24629344 Free PMC article.
SnapShot: the human microbiome.
González A, Vázquez-Baeza Y, Knight R. González A, et al. Cell. 2014 Jul 31;158(3):690-690.e1. doi: 10.1016/j.cell.2014.07.019. Cell. 2014. PMID: 25083877 Free article. No abstract available.
From Sample to Multi-Omics Conclusions in under 48 Hours.
Quinn RA, Navas-Molina JA, Hyde ER, Song SJ, Vázquez-Baeza Y, Humphrey G, Gaffney J, Minich JJ, Melnik AV, Herschend J, DeReus J, Durant A, Dutton RJ, Khosroheidari M, Green C, da Silva R, Dorrestein PC, Knight R. Quinn RA, et al. mSystems. 2016 Apr 26;1(2):e00038-16. doi: 10.1128/mSystems.00038-16. eCollection 2016 Mar-Apr. mSystems. 2016. PMID: 27822524 Free PMC article.
Avoiding Pandemic Fears in the Subway and Conquering the Platypus.
Gonzalez A, Vázquez-Baeza Y, Pettengill JB, Ottesen A, McDonald D, Knight R. Gonzalez A, et al. mSystems. 2016 Jun 28;1(3):e00050-16. doi: 10.1128/mSystems.00050-16. eCollection 2016 May-Jun. mSystems. 2016. PMID: 27832215 Free PMC article.
75 results