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Multiregion whole-exome sequencing of intraductal papillary mucinous neoplasms reveals frequent somatic KLF4 mutations predominantly in low-grade regions.
Fujikura K, Hosoda W, Felsenstein M, Song Q, Reiter JG, Zheng L, Beleva Guthrie V, Rincon N, Dal Molin M, Dudley J, Cohen JD, Wang P, Fischer CG, Braxton AM, Noë M, Jongepier M, Fernández-Del Castillo C, Mino-Kenudson M, Schmidt CM, Yip-Schneider MT, Lawlor RT, Salvia R, Roberts NJ, Thompson ED, Karchin R, Lennon AM, Jiao Y, Wood LD. Fujikura K, et al. Among authors: dudley j. Gut. 2021 May;70(5):928-939. doi: 10.1136/gutjnl-2020-321217. Epub 2020 Oct 7. Gut. 2021. PMID: 33028669 Free PMC article.
Impact of next-generation sequencing on the clinical diagnosis of pancreatic cysts.
Jones M, Zheng Z, Wang J, Dudley J, Albanese E, Kadayifci A, Dias-Santagata D, Le L, Brugge WR, Fernandez-del Castillo C, Mino-Kenudson M, Iafrate AJ, Pitman MB. Jones M, et al. Among authors: dudley j. Gastrointest Endosc. 2016 Jan;83(1):140-8. doi: 10.1016/j.gie.2015.06.047. Epub 2015 Aug 5. Gastrointest Endosc. 2016. PMID: 26253016
Detection of low-frequency DNA variants by targeted sequencing of the Watson and Crick strands.
Cohen JD, Douville C, Dudley JC, Mog BJ, Popoli M, Ptak J, Dobbyn L, Silliman N, Schaefer J, Tie J, Gibbs P, Tomasetti C, Papadopoulos N, Kinzler KW, Vogelstein B. Cohen JD, et al. Among authors: dudley jc. Nat Biotechnol. 2021 Oct;39(10):1220-1227. doi: 10.1038/s41587-021-00900-z. Epub 2021 May 3. Nat Biotechnol. 2021. PMID: 33941929 Free PMC article.
Detection of rare mutations, copy number alterations, and methylation in the same template DNA molecules.
Wang Y, Douville C, Cohen JD, Mattox A, Curtis S, Silliman N, Popoli M, Ptak J, Dobbyn L, Nehme N, Dudley JC, Summers M, Zhang M, Ho-Pham LT, Tran BNH, Tran TS, Nguyen TV, Bettegowda C, Papadopoulos N, Kinzler KW, Vogelstein B. Wang Y, et al. Among authors: dudley jc. Proc Natl Acad Sci U S A. 2023 Apr 11;120(15):e2220704120. doi: 10.1073/pnas.2220704120. Epub 2023 Apr 4. Proc Natl Acad Sci U S A. 2023. PMID: 37014860 Free PMC article.
Machine learning to detect the SINEs of cancer.
Douville C, Lahouel K, Kuo A, Grant H, Avigdor BE, Curtis SD, Summers M, Cohen JD, Wang Y, Mattox A, Dudley J, Dobbyn L, Popoli M, Ptak J, Nehme N, Silliman N, Blair C, Romans K, Thoburn C, Gizzi J, Schoen RE, Tie J, Gibbs P, Ho-Pham LT, Tran BNH, Tran TS, Nguyen TV, Goggins M, Wolfgang CL, Wang TL, Shih IM, Lennon AM, Hruban RH, Bettegowda C, Kinzler KW, Papadopoulos N, Vogelstein B, Tomasetti C. Douville C, et al. Among authors: dudley j. Sci Transl Med. 2024 Jan 24;16(731):eadi3883. doi: 10.1126/scitranslmed.adi3883. Epub 2024 Jan 24. Sci Transl Med. 2024. PMID: 38266106 Free PMC article.
944 results