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The abundance of the long intergenic non-coding RNA 01087 differentiates between luminal and triple-negative breast cancers and predicts patient outcome.
De Palma FDE, Del Monaco V, Pol JG, Kremer M, D'Argenio V, Stoll G, Montanaro D, Uszczyńska-Ratajczak B, Klein CC, Vlasova A, Botti G, D'Aiuto M, Baldi A, Guigó R, Kroemer G, Maiuri MC, Salvatore F. De Palma FDE, et al. Among authors: guigo r. Pharmacol Res. 2020 Nov;161:105249. doi: 10.1016/j.phrs.2020.105249. Epub 2020 Oct 14. Pharmacol Res. 2020. PMID: 33068730 Free article.
Extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing (RACE-Seq).
Lagarde J, Uszczynska-Ratajczak B, Santoyo-Lopez J, Gonzalez JM, Tapanari E, Mudge JM, Steward CA, Wilming L, Tanzer A, Howald C, Chrast J, Vela-Boza A, Rueda A, Lopez-Domingo FJ, Dopazo J, Reymond A, Guigó R, Harrow J. Lagarde J, et al. Among authors: guigo r. Nat Commun. 2016 Aug 17;7:12339. doi: 10.1038/ncomms12339. Nat Commun. 2016. PMID: 27531712 Free PMC article.
Brain Transcriptome Sequencing of a Natural Model of Alzheimer's Disease.
Altimiras F, Uszczynska-Ratajczak B, Camara F, Vlasova A, Palumbo E, Newhouse S, Deacon RM, Farias LA, Hurley MJ, Loyola DE, Vásquez RA, Dobson R, Guigó R, Cogram P. Altimiras F, et al. Among authors: guigo r. Front Aging Neurosci. 2017 Mar 20;9:64. doi: 10.3389/fnagi.2017.00064. eCollection 2017. Front Aging Neurosci. 2017. PMID: 28373841 Free PMC article. No abstract available.
Expression of the transcribed ultraconserved region 70 and the related long non-coding RNA AC092652.2-202 has prognostic value in Chronic Lymphocytic Leukaemia.
Bomben R, Roisman A, D'Agaro T, Castellano G, Baumann T, Delgado J, López-Guillermo A, Zucchetto A, Dal-Bo M, Bravin V, Slavutsky I, Vlasova A, Guigó R, Martin-Subero JI, Chapaprieta V, Beekman R, Martin-García D, Beà S, Salaverria I, Aymerich M, Campo E, Gattei V, Hernández L. Bomben R, et al. Among authors: guigo r. Br J Haematol. 2019 Mar;184(6):1045-1050. doi: 10.1111/bjh.15237. Epub 2018 Apr 24. Br J Haematol. 2019. PMID: 29687884 Free article. No abstract available.
Towards a complete map of the human long non-coding RNA transcriptome.
Uszczynska-Ratajczak B, Lagarde J, Frankish A, Guigó R, Johnson R. Uszczynska-Ratajczak B, et al. Among authors: guigo r. Nat Rev Genet. 2018 Sep;19(9):535-548. doi: 10.1038/s41576-018-0017-y. Nat Rev Genet. 2018. PMID: 29795125 Free PMC article. Review.
Damage-responsive elements in Drosophila regeneration.
Vizcaya-Molina E, Klein CC, Serras F, Mishra RK, Guigó R, Corominas M. Vizcaya-Molina E, et al. Among authors: guigo r. Genome Res. 2018 Dec;28(12):1852-1866. doi: 10.1101/gr.233098.117. Epub 2018 Nov 20. Genome Res. 2018. PMID: 30459214 Free PMC article.
A limited set of transcriptional programs define major cell types.
Breschi A, Muñoz-Aguirre M, Wucher V, Davis CA, Garrido-Martín D, Djebali S, Gillis J, Pervouchine DD, Vlasova A, Dobin A, Zaleski C, Drenkow J, Danyko C, Scavelli A, Reverter F, Snyder MP, Gingeras TR, Guigó R. Breschi A, et al. Among authors: guigo r. Genome Res. 2020 Jul;30(7):1047-1059. doi: 10.1101/gr.263186.120. Epub 2020 Jul 29. Genome Res. 2020. PMID: 32759341 Free PMC article.
GENCODE 2021.
Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong J, Barnes I, Berry A, Bignell A, Boix C, Carbonell Sala S, Cunningham F, Di Domenico T, Donaldson S, Fiddes IT, García Girón C, Gonzalez JM, Grego T, Hardy M, Hourlier T, Howe KL, Hunt T, Izuogu OG, Johnson R, Martin FJ, Martínez L, Mohanan S, Muir P, Navarro FCP, Parker A, Pei B, Pozo F, Riera FC, Ruffier M, Schmitt BM, Stapleton E, Suner MM, Sycheva I, Uszczynska-Ratajczak B, Wolf MY, Xu J, Yang YT, Yates A, Zerbino D, Zhang Y, Choudhary JS, Gerstein M, Guigó R, Hubbard TJP, Kellis M, Paten B, Tress ML, Flicek P. Frankish A, et al. Among authors: guigo r. Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923. doi: 10.1093/nar/gkaa1087. Nucleic Acids Res. 2021. PMID: 33270111 Free PMC article.
307 results