Kalinava N - Search Results

1

Misannotated Multi-Nucleotide Variants in Public Cancer Genomics Datasets Lead to Inaccurate Mutation Calls with Significant Implications.

Srinivasan S, Kalinava N, Aldana R, Li Z, van Hagen S, Rodenburg SYA, Wind-Rotolo M, Qian X, Sasson AS, Tang H, Kirov S. Srinivasan S, et al. Among authors: kalinava n. Cancer Res. 2021 Jan 15;81(2):282-288. doi: 10.1158/0008-5472.CAN-20-2151. Epub 2020 Oct 28. Cancer Res. 2021. PMID: 33115802

2

Modeling performance of sample collection sites using whole exome sequencing metrics.

Kalinava N, Apfel A, Cartmell R, Srinivasan S, Chien MS, Kim KI, Golhar R, Bednarz KE, Pant S, Szustakowski J, Chasalow SD, Sasson A, Kirov S. Kalinava N, et al. Biotechniques. 2020 Dec;69(6):420-426. doi: 10.2144/btn-2020-0086. Epub 2020 Oct 26. Biotechniques. 2020. PMID: 33103912 Free article.

3

Gluconeogenesis and PEPCK are critical components of healthy aging and dietary restriction life extension.

Onken B, Kalinava N, Driscoll M. Onken B, et al. Among authors: kalinava n. PLoS Genet. 2020 Aug 25;16(8):e1008982. doi: 10.1371/journal.pgen.1008982. eCollection 2020 Aug. PLoS Genet. 2020. PMID: 32841230 Free PMC article.

4

Evaluation of tissue- and plasma-derived tumor mutational burden (TMB) and genomic alterations of interest in CheckMate 848, a study of nivolumab combined with ipilimumab and nivolumab alone in patients with advanced or metastatic solid tumors with high TMB.

He J, Kalinava N, Doshi P, Pavlick DC, Albacker LA, Ebot EM, Tukachinsky H, Pratt J, Fusaro G, Oxnard GR, Green G, Fabrizio D, Baden J. He J, et al. Among authors: kalinava n. J Immunother Cancer. 2023 Nov 30;11(11):e007339. doi: 10.1136/jitc-2023-007339. J Immunother Cancer. 2023. PMID: 38035725 Free PMC article. Clinical Trial.

5

C. elegans Heterochromatin Factor SET-32 Plays an Essential Role in Transgenerational Establishment of Nuclear RNAi-Mediated Epigenetic Silencing.

Kalinava N, Ni JZ, Gajic Z, Kim M, Ushakov H, Gu SG. Kalinava N, et al. Cell Rep. 2018 Nov 20;25(8):2273-2284.e3. doi: 10.1016/j.celrep.2018.10.086. Cell Rep. 2018. PMID: 30463021 Free PMC article.

6

The spatial and temporal dynamics of nuclear RNAi-targeted retrotransposon transcripts in Caenorhabditis elegans.

Ni JZ, Kalinava N, Mendoza SG, Gu SG. Ni JZ, et al. Among authors: kalinava n. Development. 2018 Oct 22;145(20):dev167346. doi: 10.1242/dev.167346. Development. 2018. PMID: 30254142 Free PMC article.

7

MORC-1 Integrates Nuclear RNAi and Transgenerational Chromatin Architecture to Promote Germline Immortality.

Weiser NE, Yang DX, Feng S, Kalinava N, Brown KC, Khanikar J, Freeberg MA, Snyder MJ, Csankovszki G, Chan RC, Gu SG, Montgomery TA, Jacobsen SE, Kim JK. Weiser NE, et al. Among authors: kalinava n. Dev Cell. 2017 May 22;41(4):408-423.e7. doi: 10.1016/j.devcel.2017.04.023. Dev Cell. 2017. PMID: 28535375 Free PMC article.

8

Decoupling the downstream effects of germline nuclear RNAi reveals that H3K9me3 is dispensable for heritable RNAi and the maintenance of endogenous siRNA-mediated transcriptional silencing in Caenorhabditis elegans.

Kalinava N, Ni JZ, Peterman K, Chen E, Gu SG. Kalinava N, et al. Epigenetics Chromatin. 2017 Feb 15;10:6. doi: 10.1186/s13072-017-0114-8. eCollection 2017. Epigenetics Chromatin. 2017. PMID: 28228846 Free PMC article.

9

A transgenerational role of the germline nuclear RNAi pathway in repressing heat stress-induced transcriptional activation in C. elegans.

Ni JZ, Kalinava N, Chen E, Huang A, Trinh T, Gu SG. Ni JZ, et al. Among authors: kalinava n. Epigenetics Chromatin. 2016 Jan 15;9:3. doi: 10.1186/s13072-016-0052-x. eCollection 2016. Epigenetics Chromatin. 2016. PMID: 26779286 Free PMC article.

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