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Page 1
Genomes OnLine Database (GOLD) v.8: overview and updates.
Mukherjee S, Stamatis D, Bertsch J, Ovchinnikova G, Sundaramurthi JC, Lee J, Kandimalla M, Chen IA, Kyrpides NC, Reddy TBK. Mukherjee S, et al. Nucleic Acids Res. 2021 Jan 8;49(D1):D723-D733. doi: 10.1093/nar/gkaa983. Nucleic Acids Res. 2021. PMID: 33152092 Free PMC article.
Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels.
Petit E, Coppi MV, Hayes JC, Tolonen AC, Warnick T, Latouf WG, Amisano D, Biddle A, Mukherjee S, Ivanova N, Lykidis A, Land M, Hauser L, Kyrpides N, Henrissat B, Lau J, Schnell DJ, Church GM, Leschine SB, Blanchard JL. Petit E, et al. Among authors: mukherjee s. PLoS One. 2015 Jun 2;10(6):e0118285. doi: 10.1371/journal.pone.0118285. eCollection 2015. PLoS One. 2015. PMID: 26035711 Free PMC article.
Microbial species delineation using whole genome sequences.
Varghese NJ, Mukherjee S, Ivanova N, Konstantinidis KT, Mavrommatis K, Kyrpides NC, Pati A. Varghese NJ, et al. Among authors: mukherjee s. Nucleic Acids Res. 2015 Aug 18;43(14):6761-71. doi: 10.1093/nar/gkv657. Epub 2015 Jul 6. Nucleic Acids Res. 2015. PMID: 26150420 Free PMC article.
High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1(T) (DSM 17521(T)) isolated from muddy waters of a drainage system in Chandigarh, India.
Mukherjee S, Lapidus A, Shapiro N, Cheng JF, Han J, Reddy T, Huntemann M, Ivanova N, Mikhailova N, Chen A, Palaniappan K, Spring S, Göker M, Markowitz V, Woyke T, Tindall BJ, Klenk HP, Kyrpides NC, Pati A. Mukherjee S, et al. Stand Genomic Sci. 2015 Feb 9;10:8. doi: 10.1186/1944-3277-10-8. eCollection 2015. Stand Genomic Sci. 2015. PMID: 26203325 Free PMC article.
Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements.
Mukherjee S, Stamatis D, Bertsch J, Ovchinnikova G, Verezemska O, Isbandi M, Thomas AD, Ali R, Sharma K, Kyrpides NC, Reddy TB. Mukherjee S, et al. Nucleic Acids Res. 2017 Jan 4;45(D1):D446-D456. doi: 10.1093/nar/gkw992. Epub 2016 Oct 27. Nucleic Acids Res. 2017. PMID: 27794040 Free PMC article.
Genome-Based Taxonomic Classification of Bacteroidetes.
Hahnke RL, Meier-Kolthoff JP, García-López M, Mukherjee S, Huntemann M, Ivanova NN, Woyke T, Kyrpides NC, Klenk HP, Göker M. Hahnke RL, et al. Among authors: mukherjee s. Front Microbiol. 2016 Dec 20;7:2003. doi: 10.3389/fmicb.2016.02003. eCollection 2016. Front Microbiol. 2016. PMID: 28066339 Free PMC article.
Complete Genome Sequence of Nitrosomonas cryotolerans ATCC 49181, a Phylogenetically Distinct Ammonia-Oxidizing Bacterium Isolated from Arctic Waters.
Rice MC, Norton JM, Stein LY, Kozlowski J, Bollmann A, Klotz MG, Sayavedra-Soto L, Shapiro N, Goodwin LA, Huntemann M, Clum A, Pillay M, Varghese N, Mikhailova N, Palaniappan K, Ivanova N, Mukherjee S, Reddy TB, Yee Ngan C, Daum C, Kyrpides N, Woyke T. Rice MC, et al. Among authors: mukherjee s. Genome Announc. 2017 Mar 16;5(11):e00011-17. doi: 10.1128/genomeA.00011-17. Genome Announc. 2017. PMID: 28302769 Free PMC article.
Permanent Draft Genome Sequence of Desulfurococcus amylolyticus Strain Z-533T, a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia.
Susanti D, Johnson EF, Lapidus A, Han J, Reddy TB, Mukherjee S, Pillay M, Perevalova AA, Ivanova NN, Woyke T, Kyrpides NC, Mukhopadhyay B. Susanti D, et al. Among authors: mukherjee s. Genome Announc. 2017 Apr 13;5(15):e00078-17. doi: 10.1128/genomeA.00078-17. Genome Announc. 2017. PMID: 28408663 Free PMC article.
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.
Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, Coates RC, Hadjithomas M, Pavlopoulos GA, Paez-Espino D, Yoshikuni Y, Visel A, Whitman WB, Garrity GM, Eisen JA, Hugenholtz P, Pati A, Ivanova NN, Woyke T, Klenk HP, Kyrpides NC. Mukherjee S, et al. Nat Biotechnol. 2017 Jul;35(7):676-683. doi: 10.1038/nbt.3886. Epub 2017 Jun 12. Nat Biotechnol. 2017. PMID: 28604660
6,981 results