Fischer JSG - Search Results

1

Proteomics reveals that quinoa bioester promotes replenishing effects in epidermal tissue.

Camillo-Andrade AC, Santos MDM, Fischer JSG, Swinka BB, Bosquetti B, Schuck DC, Pincerati MR, Lorencini M, Carvalho PC. Camillo-Andrade AC, et al. Among authors: fischer jsg. Sci Rep. 2020 Nov 10;10(1):19392. doi: 10.1038/s41598-020-76325-6. Sci Rep. 2020. PMID: 33173110 Free PMC article.

2

PatternLab for proteomics: a tool for differential shotgun proteomics.

Carvalho PC, Fischer JS, Chen EI, Yates JR 3rd, Barbosa VC. Carvalho PC, et al. BMC Bioinformatics. 2008 Jul 21;9:316. doi: 10.1186/1471-2105-9-316. BMC Bioinformatics. 2008. PMID: 18644148 Free PMC article.

3

GO Explorer: A gene-ontology tool to aid in the interpretation of shotgun proteomics data.

Carvalho PC, Fischer JS, Chen EI, Domont GB, Carvalho MG, Degrave WM, Yates JR 3rd, Barbosa VC. Carvalho PC, et al. Proteome Sci. 2009 Feb 24;7:6. doi: 10.1186/1477-5956-7-6. Proteome Sci. 2009. PMID: 19239707 Free PMC article.

4

Analyzing marginal cases in differential shotgun proteomics.

Carvalho PC, Fischer JS, Perales J, Yates JR, Barbosa VC, Bareinboim E. Carvalho PC, et al. Bioinformatics. 2011 Jan 15;27(2):275-6. doi: 10.1093/bioinformatics/btq632. Epub 2010 Nov 11. Bioinformatics. 2011. PMID: 21075743 Free PMC article.

5

Search engine processor: Filtering and organizing peptide spectrum matches.

Carvalho PC, Fischer JS, Xu T, Cociorva D, Balbuena TS, Valente RH, Perales J, Yates JR 3rd, Barbosa VC. Carvalho PC, et al. Proteomics. 2012 Apr;12(7):944-9. doi: 10.1002/pmic.201100529. Proteomics. 2012. PMID: 22311825 Free PMC article.

6

Are gastric cancer resection margin proteomic profiles more similar to those from controls or tumors?

Aquino PF, Fischer JS, Neves-Ferreira AG, Perales J, Domont GB, Araujo GD, Barbosa VC, Viana J, Chalub SR, Lima de Souza AQ, Carvalho MG, Leão de Souza AD, Carvalho PC. Aquino PF, et al. J Proteome Res. 2012 Dec 7;11(12):5836-42. doi: 10.1021/pr300612x. Epub 2012 Nov 13. J Proteome Res. 2012. PMID: 23145836

7

PatternLab: from mass spectra to label-free differential shotgun proteomics.

Carvalho PC, Fischer JSG, Xu T, Yates JR 3rd, Barbosa VC. Carvalho PC, et al. Among authors: fischer jsg. Curr Protoc Bioinformatics. 2012 Dec;Chapter 13:13.19.1-13.19.18. doi: 10.1002/0471250953.bi1319s40. Curr Protoc Bioinformatics. 2012. PMID: 23255152

8

Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0.

Carvalho PC, Lima DB, Leprevost FV, Santos MD, Fischer JS, Aquino PF, Moresco JJ, Yates JR 3rd, Barbosa VC. Carvalho PC, et al. Nat Protoc. 2016 Jan;11(1):102-17. doi: 10.1038/nprot.2015.133. Epub 2015 Dec 10. Nat Protoc. 2016. PMID: 26658470 Free PMC article.

9

A multi-protease, multi-dissociation, bottom-up-to-top-down proteomic view of the Loxosceles intermedia venom.

Trevisan-Silva D, Bednaski AV, Fischer JSG, Veiga SS, Bandeira N, Guthals A, Marchini FK, Leprevost FV, Barbosa VC, Senff-Ribeiro A, Carvalho PC. Trevisan-Silva D, et al. Among authors: fischer jsg. Sci Data. 2017 Jul 11;4:170090. doi: 10.1038/sdata.2017.90. Sci Data. 2017. PMID: 28696408 Free PMC article.

10

Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins.

Lima DB, Melchior JT, Morris J, Barbosa VC, Chamot-Rooke J, Fioramonte M, Souza TACB, Fischer JSG, Gozzo FC, Carvalho PC, Davidson WS. Lima DB, et al. Among authors: fischer jsg. Nat Protoc. 2018 Mar;13(3):431-458. doi: 10.1038/nprot.2017.113. Epub 2018 Feb 1. Nat Protoc. 2018. PMID: 29388937

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