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Bioinformatics tools developed to support BioCompute Objects.
Patel JA, Dean DA, King CH, Xiao N, Koc S, Minina E, Golikov A, Brooks P, Kahsay R, Navelkar R, Ray M, Roberson D, Armstrong C, Mazumder R, Keeney J. Patel JA, et al. Among authors: brooks p. Database (Oxford). 2021 Mar 30;2021:baab008. doi: 10.1093/database/baab008. Database (Oxford). 2021. PMID: 33784373 Free PMC article.
Streamlining data-intensive biology with workflow systems.
Reiter T, Brooks PT, Irber L, Joslin SEK, Reid CM, Scott C, Brown CT, Pierce-Ward NT. Reiter T, et al. Gigascience. 2021 Jan 13;10(1):giaa140. doi: 10.1093/gigascience/giaa140. Gigascience. 2021. PMID: 33438730 Free PMC article.
Large-scale sequence comparisons with sourmash.
Pierce NT, Irber L, Reiter T, Brooks P, Brown CT. Pierce NT, et al. Among authors: brooks p. F1000Res. 2019 Jul 4;8:1006. doi: 10.12688/f1000research.19675.1. eCollection 2019. F1000Res. 2019. PMID: 31508216 Free PMC article.
The state-of-the-art of N-of-1 therapies and the IRDiRC N-of-1 development roadmap.
Jonker AH, Tataru EA, Graessner H, Dimmock D, Jaffe A, Baynam G, Davies J, Mitkus S, Iliach O, Horgan R, Augustine EF, Bateman-House A, Pasmooij AMG, Yu T, Synofzik M, Douville J, Lapteva L, Brooks PJ, O'Connor D, Aartsma-Rus A; N-of-1 Task Force of the International Rare Diseases Research Consortium (IRDiRC). Jonker AH, et al. Among authors: brooks pj. Nat Rev Drug Discov. 2024 Nov 4. doi: 10.1038/s41573-024-01059-3. Online ahead of print. Nat Rev Drug Discov. 2024. PMID: 39496921 Review.
Whole-brain annotation and multi-connectome cell typing of Drosophila.
Schlegel P, Yin Y, Bates AS, Dorkenwald S, Eichler K, Brooks P, Han DS, Gkantia M, Dos Santos M, Munnelly EJ, Badalamente G, Serratosa Capdevila L, Sane VA, Fragniere AMC, Kiassat L, Pleijzier MW, Stürner T, Tamimi IFM, Dunne CR, Salgarella I, Javier A, Fang S, Perlman E, Kazimiers T, Jagannathan SR, Matsliah A, Sterling AR, Yu SC, McKellar CE; FlyWire Consortium; Costa M, Seung HS, Murthy M, Hartenstein V, Bock DD, Jefferis GSXE. Schlegel P, et al. Among authors: brooks p. Nature. 2024 Oct;634(8032):139-152. doi: 10.1038/s41586-024-07686-5. Epub 2024 Oct 2. Nature. 2024. PMID: 39358521 Free PMC article.
Neuronal wiring diagram of an adult brain.
Dorkenwald S, Matsliah A, Sterling AR, Schlegel P, Yu SC, McKellar CE, Lin A, Costa M, Eichler K, Yin Y, Silversmith W, Schneider-Mizell C, Jordan CS, Brittain D, Halageri A, Kuehner K, Ogedengbe O, Morey R, Gager J, Kruk K, Perlman E, Yang R, Deutsch D, Bland D, Sorek M, Lu R, Macrina T, Lee K, Bae JA, Mu S, Nehoran B, Mitchell E, Popovych S, Wu J, Jia Z, Castro MA, Kemnitz N, Ih D, Bates AS, Eckstein N, Funke J, Collman F, Bock DD, Jefferis GSXE, Seung HS, Murthy M; FlyWire Consortium. Dorkenwald S, et al. Nature. 2024 Oct;634(8032):124-138. doi: 10.1038/s41586-024-07558-y. Epub 2024 Oct 2. Nature. 2024. PMID: 39358518 Free PMC article.
1,286 results