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A comparison of parallel pyrosequencing and sanger clone-based sequencing and its impact on the characterization of the genetic diversity of HIV-1.
Liang B, Luo M, Scott-Herridge J, Semeniuk C, Mendoza M, Capina R, Sheardown B, Ji H, Kimani J, Ball BT, Van Domselaar G, Graham M, Tyler S, Jones SJ, Plummer FA. Liang B, et al. Among authors: capina r. PLoS One. 2011;6(10):e26745. doi: 10.1371/journal.pone.0026745. Epub 2011 Oct 21. PLoS One. 2011. PMID: 22039546 Free PMC article.
Prevalence of Primary Drug Resistance Against HIV-1 Integrase Inhibitors in Canada.
Ji H, Patterson A, Taylor T, Rank C, Halverson J, Capina R, Brooks J, Sandstrom P. Ji H, et al. Among authors: capina r. J Acquir Immune Defic Syndr. 2018 May 1;78(1):e1-e3. doi: 10.1097/QAI.0000000000001649. J Acquir Immune Defic Syndr. 2018. PMID: 29424788 Free PMC article. No abstract available.
Bioinformatic data processing pipelines in support of next-generation sequencing-based HIV drug resistance testing: the Winnipeg Consensus.
Ji H, Enns E, Brumme CJ, Parkin N, Howison M, Lee ER, Capina R, Marinier E, Avila-Rios S, Sandstrom P, Van Domselaar G, Harrigan R, Paredes R, Kantor R, Noguera-Julian M. Ji H, et al. Among authors: capina r. J Int AIDS Soc. 2018 Oct;21(10):e25193. doi: 10.1002/jia2.25193. J Int AIDS Soc. 2018. PMID: 30350345 Free PMC article.
Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing.
Lee ER, Parkin N, Jennings C, Brumme CJ, Enns E, Casadellà M, Howison M, Coetzer M, Avila-Rios S, Capina R, Marinier E, Van Domselaar G, Noguera-Julian M, Kirkby D, Knaggs J, Harrigan R, Quiñones-Mateu M, Paredes R, Kantor R, Sandstrom P, Ji H. Lee ER, et al. Among authors: capina r. Sci Rep. 2020 Jan 31;10(1):1634. doi: 10.1038/s41598-020-58544-z. Sci Rep. 2020. PMID: 32005884 Free PMC article.
HIV acquisition prior to entry into formal sex work: inference from next-generation viral sequencing.
Neufeld B, Cholette F, Sandstrom P, Musyoki H, Ma H, Kaosa S, Kioko J, Isac S, Bhattacharjee P, Cheuk E, Pickles M, Mwatelah R, Capiña R, Daniuk C, Mckinnon LR, Blanchard J, Mishra S, Becker M; on behalf of the Transitions Study Team. Neufeld B, et al. Among authors: capina r. AIDS. 2023 May 1;37(6):987-992. doi: 10.1097/QAD.0000000000003484. Epub 2023 Jan 19. AIDS. 2023. PMID: 36727844 Free PMC article.
18 results