Shen MW - Search Results

1

Machine learning based CRISPR gRNA design for therapeutic exon skipping.

Louie W, Shen MW, Tahiry Z, Zhang S, Worstell D, Cassa CA, Sherwood RI, Gifford DK. Louie W, et al. Among authors: shen mw. PLoS Comput Biol. 2021 Jan 8;17(1):e1008605. doi: 10.1371/journal.pcbi.1008605. eCollection 2021 Jan. PLoS Comput Biol. 2021. PMID: 33417623 Free PMC article.

2

Predictable and precise template-free CRISPR editing of pathogenic variants.

Shen MW, Arbab M, Hsu JY, Worstell D, Culbertson SJ, Krabbe O, Cassa CA, Liu DR, Gifford DK, Sherwood RI. Shen MW, et al. Nature. 2018 Nov;563(7733):646-651. doi: 10.1038/s41586-018-0686-x. Epub 2018 Nov 7. Nature. 2018. PMID: 30405244 Free PMC article.

3

Author Correction: Predictable and precise template-free CRISPR editing of pathogenic variants.

Shen MW, Arbab M, Hsu JY, Worstell D, Culbertson SJ, Krabbe O, Cassa CA, Liu DR, Gifford DK, Sherwood RI. Shen MW, et al. Nature. 2019 Mar;567(7746):E1-E2. doi: 10.1038/s41586-019-0938-4. Nature. 2019. PMID: 30765887

4

Determinants of Base Editing Outcomes from Target Library Analysis and Machine Learning.

Arbab M, Shen MW, Mok B, Wilson C, Matuszek Ż, Cassa CA, Liu DR. Arbab M, et al. Among authors: shen mw. Cell. 2020 Jul 23;182(2):463-480.e30. doi: 10.1016/j.cell.2020.05.037. Epub 2020 Jun 12. Cell. 2020. PMID: 32533916 Free PMC article.

5

Comprehensive Mapping of Key Regulatory Networks that Drive Oncogene Expression.

Lin L, Holmes B, Shen MW, Kammeron D, Geijsen N, Gifford DK, Sherwood RI. Lin L, et al. Among authors: shen mw. Cell Rep. 2020 Nov 24;33(8):108426. doi: 10.1016/j.celrep.2020.108426. Cell Rep. 2020. PMID: 33238122 Free PMC article.

6

PrimeDesign software for rapid and simplified design of prime editing guide RNAs.

Hsu JY, Grünewald J, Szalay R, Shih J, Anzalone AV, Lam KC, Shen MW, Petri K, Liu DR, Joung JK, Pinello L. Hsu JY, et al. Among authors: shen mw. Nat Commun. 2021 Feb 15;12(1):1034. doi: 10.1038/s41467-021-21337-7. Nat Commun. 2021. PMID: 33589617 Free PMC article.

7

Detection of gene cis-regulatory element perturbations in single-cell transcriptomes.

Yeo GHT, Juez O, Chen Q, Banerjee B, Chu L, Shen MW, Sabry M, Logister I, Sherwood RI, Gifford DK. Yeo GHT, et al. Among authors: shen mw. PLoS Comput Biol. 2021 Mar 12;17(3):e1008789. doi: 10.1371/journal.pcbi.1008789. eCollection 2021 Mar. PLoS Comput Biol. 2021. PMID: 33711017 Free PMC article.

8

Efficient C•G-to-G•C base editors developed using CRISPRi screens, target-library analysis, and machine learning.

Koblan LW, Arbab M, Shen MW, Hussmann JA, Anzalone AV, Doman JL, Newby GA, Yang D, Mok B, Replogle JM, Xu A, Sisley TA, Weissman JS, Adamson B, Liu DR. Koblan LW, et al. Among authors: shen mw. Nat Biotechnol. 2021 Nov;39(11):1414-1425. doi: 10.1038/s41587-021-00938-z. Epub 2021 Jun 28. Nat Biotechnol. 2021. PMID: 34183861 Free PMC article.

9

Small molecule inhibition of ATM kinase increases CRISPR-Cas9 1-bp insertion frequency.

Bermudez-Cabrera HC, Culbertson S, Barkal S, Holmes B, Shen MW, Zhang S, Gifford DK, Sherwood RI. Bermudez-Cabrera HC, et al. Among authors: shen mw. Nat Commun. 2021 Aug 25;12(1):5111. doi: 10.1038/s41467-021-25415-8. Nat Commun. 2021. PMID: 34433825 Free PMC article.

10

Peptide fusion improves prime editing efficiency.

Velimirovic M, Zanetti LC, Shen MW, Fife JD, Lin L, Cha M, Akinci E, Barnum D, Yu T, Sherwood RI. Velimirovic M, et al. Among authors: shen mw. Nat Commun. 2022 Jun 18;13(1):3512. doi: 10.1038/s41467-022-31270-y. Nat Commun. 2022. PMID: 35717416 Free PMC article.

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