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Streamlining data-intensive biology with workflow systems.
Reiter T, Brooks PT, Irber L, Joslin SEK, Reid CM, Scott C, Brown CT, Pierce-Ward NT. Reiter T, et al. Among authors: brown ct. Gigascience. 2021 Jan 13;10(1):giaa140. doi: 10.1093/gigascience/giaa140. Gigascience. 2021. PMID: 33438730 Free PMC article.
The khmer software package: enabling efficient nucleotide sequence analysis.
Crusoe MR, Alameldin HF, Awad S, Boucher E, Caldwell A, Cartwright R, Charbonneau A, Constantinides B, Edvenson G, Fay S, Fenton J, Fenzl T, Fish J, Garcia-Gutierrez L, Garland P, Gluck J, González I, Guermond S, Guo J, Gupta A, Herr JR, Howe A, Hyer A, Härpfer A, Irber L, Kidd R, Lin D, Lippi J, Mansour T, McA'Nulty P, McDonald E, Mizzi J, Murray KD, Nahum JR, Nanlohy K, Nederbragt AJ, Ortiz-Zuazaga H, Ory J, Pell J, Pepe-Ranney C, Russ ZN, Schwarz E, Scott C, Seaman J, Sievert S, Simpson J, Skennerton CT, Spencer J, Srinivasan R, Standage D, Stapleton JA, Steinman SR, Stein J, Taylor B, Trimble W, Wiencko HL, Wright M, Wyss B, Zhang Q, Zyme E, Brown CT. Crusoe MR, et al. Among authors: brown ct. F1000Res. 2015 Sep 25;4:900. doi: 10.12688/f1000research.6924.1. eCollection 2015. F1000Res. 2015. PMID: 26535114 Free PMC article.
Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing.
Stapleton JA, Kim J, Hamilton JP, Wu M, Irber LC, Maddamsetti R, Briney B, Newton L, Burton DR, Brown CT, Chan C, Buell CR, Whitehead TA. Stapleton JA, et al. Among authors: brown ct. PLoS One. 2016 Jan 20;11(1):e0147229. doi: 10.1371/journal.pone.0147229. eCollection 2016. PLoS One. 2016. PMID: 26789840 Free PMC article.
Sequencing data discovery with MetaSeek.
Hoarfrost A, Brown N, Brown CT, Arnosti C. Hoarfrost A, et al. Among authors: brown ct, brown n. Bioinformatics. 2019 Nov 1;35(22):4857-4859. doi: 10.1093/bioinformatics/btz499. Bioinformatics. 2019. PMID: 31225863
Large-scale sequence comparisons with sourmash.
Pierce NT, Irber L, Reiter T, Brooks P, Brown CT. Pierce NT, et al. Among authors: brown ct. F1000Res. 2019 Jul 4;8:1006. doi: 10.12688/f1000research.19675.1. eCollection 2019. F1000Res. 2019. PMID: 31508216 Free PMC article.
Comparative Immunogenomics of Canine Natural Killer Cells as Immunotherapy Target.
Gingrich AA, Reiter TE, Judge SJ, York D, Yanagisawa M, Razmara A, Sturgill I, Basmaci UN, Brady RV, Stoffel K, Murphy WJ, Rebhun RB, Brown CT, Canter RJ. Gingrich AA, et al. Among authors: brown ct. Front Immunol. 2021 Sep 14;12:670309. doi: 10.3389/fimmu.2021.670309. eCollection 2021. Front Immunol. 2021. PMID: 34594320 Free PMC article.
295 results