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Page 1
Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure.
Rando HM, MacLean AL, Lee AJ, Lordan R, Ray S, Bansal V, Skelly AN, Sell E, Dziak JJ, Shinholster L, McGowan LD, Guebila MB, Wellhausen N, Knyazev S, Boca SM, Capone S, Qi Y, Park Y, Sun Y, Mai D, Boerckel JD, Brueffer C, Byrd JB, Kamil JP, Wang J, Velazquez R, Szeto GL, Barton JP, Goel RR, Mangul S, Lubiana T; COVID-19 Review Consortium; Gitter A, Greene CS. Rando HM, et al. Among authors: mangul s. ArXiv [Preprint]. 2021 Feb 1:arXiv:2102.01521v4. ArXiv. 2021. Update in: mSystems. 2021 Oct 26;6(5):e0009521. doi: 10.1128/mSystems.00095-21 PMID: 33594340 Free PMC article. Updated. Preprint.
Whole blood transcriptomics identifies subclasses of pediatric septic shock.
Yang JO, Zinter MS, Pellegrini M, Wong MY, Gala K, Markovic D, Nadel B, Peng K, Do N, Mangul S, Nadkarni VM, Karlsberg A, Deshpande D, Butte MJ, Asaro L, Agus M, Sapru A; Study Site Investigators for CAF-PINT. Yang JO, et al. Among authors: mangul s. Crit Care. 2023 Dec 8;27(1):486. doi: 10.1186/s13054-023-04689-y. Crit Care. 2023. PMID: 38066613 Free PMC article.
Rigorous benchmarking of T-cell receptor repertoire profiling methods for cancer RNA sequencing.
Peng K, Nowicki TS, Campbell K, Vahed M, Peng D, Meng Y, Nagareddy A, Huang YN, Karlsberg A, Miller Z, Brito J, Nadel B, Pak VM, Abedalthagafi MS, Burkhardt AM, Alachkar H, Ribas A, Mangul S. Peng K, et al. Among authors: mangul s. Brief Bioinform. 2023 Jul 20;24(4):bbad220. doi: 10.1093/bib/bbad220. Brief Bioinform. 2023. PMID: 37291798 Free PMC article.
Unlocking capacities of viral genomics for the COVID-19 pandemic response.
Knyazev S, Chhugani K, Sarwal V, Ayyala R, Singh H, Karthikeyan S, Deshpande D, Comarova Z, Lu A, Porozov Y, Wu A, Abedalthagafi MS, Nagaraj SH, Smith AL, Skums P, Ladner J, Lam TT, Wu NC, Zelikovsky A, Knight R, Crandall KA, Mangul S. Knyazev S, et al. Among authors: mangul s. ArXiv [Preprint]. 2021 Apr 28:arXiv:2104.14005v3. ArXiv. 2021. Update in: Nat Methods. 2022 Apr;19(4):374-380. doi: 10.1038/s41592-022-01444-z PMID: 33948451 Free PMC article. Updated. Preprint.
Correction for Rando et al., "Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure".
Rando HM, MacLean AL, Lee AJ, Lordan R, Ray S, Bansal V, Skelly AN, Sell E, Dziak JJ, Shinholster L, D'Agostino McGowan L, Ben Guebila M, Wellhausen N, Knyazev S, Boca SM, Capone S, Qi Y, Park Y, Mai D, Sun Y, Boerckel JD, Brueffer C, Byrd JB, Kamil JP, Wang J, Velazquez R, Szeto GL, Barton JP, Goel RR, Mangul S, Lubiana T; COVID-19 Review Consortium; Gitter A, Greene CS. Rando HM, et al. Among authors: mangul s. mSystems. 2022 Feb 22;7(1):e0144721. doi: 10.1128/msystems.01447-21. Epub 2022 Jan 25. mSystems. 2022. PMID: 35076276 Free PMC article. No abstract available.
Technology dictates algorithms: recent developments in read alignment.
Alser M, Rotman J, Deshpande D, Taraszka K, Shi H, Baykal PI, Yang HT, Xue V, Knyazev S, Singer BD, Balliu B, Koslicki D, Skums P, Zelikovsky A, Alkan C, Mutlu O, Mangul S. Alser M, et al. Among authors: mangul s. Genome Biol. 2021 Aug 26;22(1):249. doi: 10.1186/s13059-021-02443-7. Genome Biol. 2021. PMID: 34446078 Free PMC article. Review.
Unlocking capacities of genomics for the COVID-19 response and future pandemics.
Knyazev S, Chhugani K, Sarwal V, Ayyala R, Singh H, Karthikeyan S, Deshpande D, Baykal PI, Comarova Z, Lu A, Porozov Y, Vasylyeva TI, Wertheim JO, Tierney BT, Chiu CY, Sun R, Wu A, Abedalthagafi MS, Pak VM, Nagaraj SH, Smith AL, Skums P, Pasaniuc B, Komissarov A, Mason CE, Bortz E, Lemey P, Kondrashov F, Beerenwinkel N, Lam TT, Wu NC, Zelikovsky A, Knight R, Crandall KA, Mangul S. Knyazev S, et al. Among authors: mangul s. Nat Methods. 2022 Apr;19(4):374-380. doi: 10.1038/s41592-022-01444-z. Nat Methods. 2022. PMID: 35396471 Free PMC article.
Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing.
Mandric I, Rotman J, Yang HT, Strauli N, Montoya DJ, Van Der Wey W, Ronas JR, Statz B, Yao D, Petrova V, Zelikovsky A, Spreafico R, Shifman S, Zaitlen N, Rossetti M, Ansel KM, Eskin E, Mangul S. Mandric I, et al. Among authors: mangul s. Nat Commun. 2020 Jun 19;11(1):3126. doi: 10.1038/s41467-020-16857-7. Nat Commun. 2020. PMID: 32561710 Free PMC article.
98 results