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Ancestral haplotype reconstruction in endogamous populations using identity-by-descent.
Finke K, Kourakos M, Brown G, Dang HT, Tan SJS, Simons YB, Ramdas S, Schäffer AA, Kember RL, Bućan M, Mathieson S. Finke K, et al. Among authors: schaffer aa. PLoS Comput Biol. 2021 Feb 26;17(2):e1008638. doi: 10.1371/journal.pcbi.1008638. eCollection 2021 Feb. PLoS Comput Biol. 2021. PMID: 33635861 Free PMC article.
Distinct genetic alterations in colorectal cancer.
Ashktorab H, Schäffer AA, Daremipouran M, Smoot DT, Lee E, Brim H. Ashktorab H, et al. Among authors: schaffer aa. PLoS One. 2010 Jan 26;5(1):e8879. doi: 10.1371/journal.pone.0008879. PLoS One. 2010. PMID: 20126641 Free PMC article.
Temporal genomic analysis of homogeneous tumor models reveals key regulators of immune evasion in melanoma.
Cohen Shvefel S, Pai JA, Cao Y, Pal LR, Bartok O, Levy R, Zemanek MJ, Weller C, Herzog E, Yao W, Hiam-Galvez KJ, Cheng K, Yin Y, Du PP, Raposo CJ, Gumpert N, Welti M, Martínez Gómez JM, Sella F, Yakubovich E, Orr I, Ben-Dor S, Oren R, Fellus-Alyagor L, Golani O, Brenner OJ, Salame TM, Zerbib M, Goliand I, Ranmar D, Savchenko I, Ketrarou N, Schaffer AA, Dahan R, Levesque MP, Ruppin E, Satpathy AT, Samuels Y. Cohen Shvefel S, et al. Among authors: schaffer aa. Cancer Discov. 2024 Nov 20. doi: 10.1158/2159-8290.CD-23-1422. Online ahead of print. Cancer Discov. 2024. PMID: 39715301
Tumor and blood B-cell abundance outperforms established immune checkpoint blockade response prediction signatures in head and neck cancer.
Chang TG, Spathis A, Schäffer AA, Gavrielatou N, Kuo F, Jia D, Mukherjee S, Sievers C, Economopoulou P, Anastasiou M, Moutafi M, Pal LR, Vos J, Lee AS, Lam S, Zhao K, Jiang P, Allen CT, Foukas P, Gomatou G, Altan-Bonnet G, Morris LGT, Psyrri A, Ruppin E. Chang TG, et al. Among authors: schaffer aa. Ann Oncol. 2024 Nov 17:S0923-7534(24)04914-7. doi: 10.1016/j.annonc.2024.11.008. Online ahead of print. Ann Oncol. 2024. PMID: 39551185
307 results