Baker D - Search Results

1

Protein sequence design by conformational landscape optimization.

Norn C, Wicky BIM, Juergens D, Liu S, Kim D, Tischer D, Koepnick B, Anishchenko I; Foldit Players; Baker D, Ovchinnikov S. Norn C, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 2021 Mar 16;118(11):e2017228118. doi: 10.1073/pnas.2017228118. Proc Natl Acad Sci U S A. 2021. PMID: 33712545 Free PMC article.

2

Global properties of the mapping between local amino acid sequence and local structure in proteins.

Han KF, Baker D. Han KF, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 1996 Jun 11;93(12):5814-8. doi: 10.1073/pnas.93.12.5814. Proc Natl Acad Sci U S A. 1996. PMID: 8650175 Free PMC article.

3

Local sequence-structure correlations in proteins.

Bystroff C, Simons KT, Han KF, Baker D. Bystroff C, et al. Among authors: baker d. Curr Opin Biotechnol. 1996 Aug;7(4):417-21. doi: 10.1016/s0958-1669(96)80117-0. Curr Opin Biotechnol. 1996. PMID: 8768900 Review.

4

Local interactions and the optimization of protein folding.

Doyle R, Simons K, Qian H, Baker D. Doyle R, et al. Among authors: baker d. Proteins. 1997 Nov;29(3):282-91. doi: 10.1002/(sici)1097-0134(199711)29:3<282::aid-prot3>3.0.co;2-d. Proteins. 1997. PMID: 9365984

5

Protein folding kinetics exhibit an Arrhenius temperature dependence when corrected for the temperature dependence of protein stability.

Scalley ML, Baker D. Scalley ML, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 1997 Sep 30;94(20):10636-40. doi: 10.1073/pnas.94.20.10636. Proc Natl Acad Sci U S A. 1997. PMID: 9380687 Free PMC article.

6

Contrasting roles for symmetrically disposed beta-turns in the folding of a small protein.

Gu H, Kim D, Baker D. Gu H, et al. Among authors: baker d. J Mol Biol. 1997 Dec 12;274(4):588-96. doi: 10.1006/jmbi.1997.1374. J Mol Biol. 1997. PMID: 9417937

7

The sequences of small proteins are not extensively optimized for rapid folding by natural selection.

Kim DE, Gu H, Baker D. Kim DE, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 1998 Apr 28;95(9):4982-6. doi: 10.1073/pnas.95.9.4982. Proc Natl Acad Sci U S A. 1998. PMID: 9560214 Free PMC article.

8

Clustering of low-energy conformations near the native structures of small proteins.

Shortle D, Simons KT, Baker D. Shortle D, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 1998 Sep 15;95(19):11158-62. doi: 10.1073/pnas.95.19.11158. Proc Natl Acad Sci U S A. 1998. PMID: 9736706 Free PMC article.

9

Limited internal friction in the rate-limiting step of a two-state protein folding reaction.

Plaxco KW, Baker D. Plaxco KW, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 1998 Nov 10;95(23):13591-6. doi: 10.1073/pnas.95.23.13591. Proc Natl Acad Sci U S A. 1998. PMID: 9811844 Free PMC article.

10

The single helix in protein L is largely disrupted at the rate-limiting step in folding.

Kim DE, Yi Q, Gladwin ST, Goldberg JM, Baker D. Kim DE, et al. Among authors: baker d. J Mol Biol. 1998 Dec 4;284(3):807-15. doi: 10.1006/jmbi.1998.2200. J Mol Biol. 1998. PMID: 9826517

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