Bohrer CH - Search Results

1

The Stochastic Genome and Its Role in Gene Expression.

Bohrer CH, Larson DR. Bohrer CH, et al. Cold Spring Harb Perspect Biol. 2021 Oct 1;13(10):a040386. doi: 10.1101/cshperspect.a040386. Cold Spring Harb Perspect Biol. 2021. PMID: 33903158 Free PMC article. Review.

2

A spatially resolved stochastic model reveals the role of supercoiling in transcription regulation.

Geng Y, Bohrer CH, Yehya N, Hendrix H, Shachaf L, Liu J, Xiao J, Roberts E. Geng Y, et al. Among authors: bohrer ch. PLoS Comput Biol. 2022 Sep 19;18(9):e1009788. doi: 10.1371/journal.pcbi.1009788. eCollection 2022 Sep. PLoS Comput Biol. 2022. PMID: 36121892 Free PMC article.

3

Spatial organization of RNA polymerase and its relationship with transcription in Escherichia coli.

Weng X, Bohrer CH, Bettridge K, Lagda AC, Cagliero C, Jin DJ, Xiao J. Weng X, et al. Among authors: bohrer ch. Proc Natl Acad Sci U S A. 2019 Oct 1;116(40):20115-20123. doi: 10.1073/pnas.1903968116. Epub 2019 Sep 16. Proc Natl Acad Sci U S A. 2019. PMID: 31527272 Free PMC article.

4

Dynamics of simple gene-network motifs subject to extrinsic fluctuations.

Roberts E, Be'er S, Bohrer C, Sharma R, Assaf M. Roberts E, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Dec;92(6):062717. doi: 10.1103/PhysRevE.92.062717. Epub 2015 Dec 31. Phys Rev E Stat Nonlin Soft Matter Phys. 2015. PMID: 26764737

5

A biophysical model of supercoiling dependent transcription predicts a structural aspect to gene regulation.

Bohrer CH, Roberts E. Bohrer CH, et al. BMC Biophys. 2016 Feb 6;9:2. doi: 10.1186/s13628-016-0027-0. eCollection 2015. BMC Biophys. 2016. PMID: 26855771 Free PMC article.

6

Biospark: scalable analysis of large numerical datasets from biological simulations and experiments using Hadoop and Spark.

Klein M, Sharma R, Bohrer CH, Avelis CM, Roberts E. Klein M, et al. Among authors: bohrer ch. Bioinformatics. 2017 Jan 15;33(2):303-305. doi: 10.1093/bioinformatics/btw614. Epub 2016 Sep 22. Bioinformatics. 2017. PMID: 27663493 Free PMC article.

7

Reduction of Confinement Error in Single-Molecule Tracking in Live Bacterial Cells Using SPICER.

Bohrer CH, Bettridge K, Xiao J. Bohrer CH, et al. Biophys J. 2017 Feb 28;112(4):568-574. doi: 10.1016/j.bpj.2017.01.004. Biophys J. 2017. PMID: 28256217 Free PMC article.

8

Cell fate potentials and switching kinetics uncovered in a classic bistable genetic switch.

Fang X, Liu Q, Bohrer C, Hensel Z, Han W, Wang J, Xiao J. Fang X, et al. Nat Commun. 2018 Jul 17;9(1):2787. doi: 10.1038/s41467-018-05071-1. Nat Commun. 2018. PMID: 30018349 Free PMC article.

9

Complex Diffusion in Bacteria.

Bohrer CH, Xiao J. Bohrer CH, et al. Adv Exp Med Biol. 2020;1267:15-43. doi: 10.1007/978-3-030-46886-6_2. Adv Exp Med Biol. 2020. PMID: 32894475 Free PMC article. Review.

10

Spatially compartmentalized phase regulation of a Ca²⁺-cAMP-PKA oscillatory circuit.

Tenner B, Getz M, Ross B, Ohadi D, Bohrer CH, Greenwald E, Mehta S, Xiao J, Rangamani P, Zhang J. Tenner B, et al. Among authors: bohrer ch. Elife. 2020 Nov 17;9:e55013. doi: 10.7554/eLife.55013. Elife. 2020. PMID: 33201801 Free PMC article.

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