Zarecki R - Search Results

1

Strategies for Enhancing in vitro Degradation of Linuron by Variovorax sp. Strain SRS 16 Under the Guidance of Metabolic Modeling.

Dhakar K, Zarecki R, van Bommel D, Knossow N, Medina S, Öztürk B, Aly R, Eizenberg H, Ronen Z, Freilich S. Dhakar K, et al. Among authors: zarecki r. Front Bioeng Biotechnol. 2021 Apr 15;9:602464. doi: 10.3389/fbioe.2021.602464. eCollection 2021. Front Bioeng Biotechnol. 2021. PMID: 33937210 Free PMC article.

2

Modeling microbial communities from atrazine contaminated soils promotes the development of biostimulation solutions.

Xu X, Zarecki R, Medina S, Ofaim S, Liu X, Chen C, Hu S, Brom D, Gat D, Porob S, Eizenberg H, Ronen Z, Jiang J, Freilich S. Xu X, et al. Among authors: zarecki r. ISME J. 2019 Feb;13(2):494-508. doi: 10.1038/s41396-018-0288-5. Epub 2018 Oct 5. ISME J. 2019. PMID: 30291327 Free PMC article.

3

Genome-scale reconstruction of Paenarthrobacter aurescens TC1 metabolic model towards the study of atrazine bioremediation.

Ofaim S, Zarecki R, Porob S, Gat D, Lahav T, Kashi Y, Aly R, Eizenberg H, Ronen Z, Freilich S. Ofaim S, et al. Among authors: zarecki r. Sci Rep. 2020 Aug 3;10(1):13019. doi: 10.1038/s41598-020-69509-7. Sci Rep. 2020. PMID: 32747737 Free PMC article.

4

Modeling-Guided Amendments Lead to Enhanced Biodegradation in Soil.

Dhakar K, Zarecki R, Medina S, Ziadna H, Igbaria K, Lati R, Ronen Z, Eizenberg H, Freilich S. Dhakar K, et al. Among authors: zarecki r. mSystems. 2022 Aug 30;7(4):e0016922. doi: 10.1128/msystems.00169-22. Epub 2022 Aug 1. mSystems. 2022. PMID: 35913191 Free PMC article.

5

Maximal sum of metabolic exchange fluxes outperforms biomass yield as a predictor of growth rate of microorganisms.

Zarecki R, Oberhardt MA, Yizhak K, Wagner A, Shtifman Segal E, Freilich S, Henry CS, Gophna U, Ruppin E. Zarecki R, et al. PLoS One. 2014 May 27;9(5):e98372. doi: 10.1371/journal.pone.0098372. eCollection 2014. PLoS One. 2014. PMID: 24866123 Free PMC article.

6

Competitive and cooperative metabolic interactions in bacterial communities.

Freilich S, Zarecki R, Eilam O, Segal ES, Henry CS, Kupiec M, Gophna U, Sharan R, Ruppin E. Freilich S, et al. Among authors: zarecki r. Nat Commun. 2011 Dec 13;2:589. doi: 10.1038/ncomms1597. Nat Commun. 2011. PMID: 22158444 Free article.

7

A novel nutritional predictor links microbial fastidiousness with lowered ubiquity, growth rate, and cooperativeness.

Zarecki R, Oberhardt MA, Reshef L, Gophna U, Ruppin E. Zarecki R, et al. PLoS Comput Biol. 2014 Jul 17;10(7):e1003726. doi: 10.1371/journal.pcbi.1003726. eCollection 2014 Jul. PLoS Comput Biol. 2014. PMID: 25033033 Free PMC article.

8

Glycan degradation (GlyDeR) analysis predicts mammalian gut microbiota abundance and host diet-specific adaptations.

Eilam O, Zarecki R, Oberhardt M, Ursell LK, Kupiec M, Knight R, Gophna U, Ruppin E. Eilam O, et al. Among authors: zarecki r. mBio. 2014 Aug 12;5(4):e01526-14. doi: 10.1128/mBio.01526-14. mBio. 2014. PMID: 25118239 Free PMC article.

9

Harnessing the landscape of microbial culture media to predict new organism-media pairings.

Oberhardt MA, Zarecki R, Gronow S, Lang E, Klenk HP, Gophna U, Ruppin E. Oberhardt MA, et al. Among authors: zarecki r. Nat Commun. 2015 Oct 13;6:8493. doi: 10.1038/ncomms9493. Nat Commun. 2015. PMID: 26460590 Free PMC article.

10

Computational evaluation of cellular metabolic costs successfully predicts genes whose expression is deleterious.

Wagner A, Zarecki R, Reshef L, Gochev C, Sorek R, Gophna U, Ruppin E. Wagner A, et al. Among authors: zarecki r. Proc Natl Acad Sci U S A. 2013 Nov 19;110(47):19166-71. doi: 10.1073/pnas.1312361110. Epub 2013 Nov 6. Proc Natl Acad Sci U S A. 2013. PMID: 24198337 Free PMC article.

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