Chakraborty P - Search Results

1

Identification of EMT signaling cross-talk and gene regulatory networks by single-cell RNA sequencing.

Deshmukh AP, Vasaikar SV, Tomczak K, Tripathi S, den Hollander P, Arslan E, Chakraborty P, Soundararajan R, Jolly MK, Rai K, Levine H, Mani SA. Deshmukh AP, et al. Among authors: chakraborty p. Proc Natl Acad Sci U S A. 2021 May 11;118(19):e2102050118. doi: 10.1073/pnas.2102050118. Proc Natl Acad Sci U S A. 2021. PMID: 33941680 Free PMC article.

2

A mechanism for epithelial-mesenchymal heterogeneity in a population of cancer cells.

Tripathi S, Chakraborty P, Levine H, Jolly MK. Tripathi S, et al. Among authors: chakraborty p. PLoS Comput Biol. 2020 Feb 10;16(2):e1007619. doi: 10.1371/journal.pcbi.1007619. eCollection 2020 Feb. PLoS Comput Biol. 2020. PMID: 32040502 Free PMC article.

3

Emergent Properties of the HNF4α-PPARγ Network May Drive Consequent Phenotypic Plasticity in NAFLD.

Sahoo S, Singh D, Chakraborty P, Jolly MK. Sahoo S, et al. Among authors: chakraborty p. J Clin Med. 2020 Mar 22;9(3):870. doi: 10.3390/jcm9030870. J Clin Med. 2020. PMID: 32235813 Free PMC article.

4

Comparative Study of Transcriptomics-Based Scoring Metrics for the Epithelial-Hybrid-Mesenchymal Spectrum.

Chakraborty P, George JT, Tripathi S, Levine H, Jolly MK. Chakraborty P, et al. Front Bioeng Biotechnol. 2020 Mar 20;8:220. doi: 10.3389/fbioe.2020.00220. eCollection 2020. Front Bioeng Biotechnol. 2020. PMID: 32266244 Free PMC article.

5

Epigenetic feedback and stochastic partitioning during cell division can drive resistance to EMT.

Jia W, Tripathi S, Chakraborty P, Chedere A, Rangarajan A, Levine H, Jolly MK. Jia W, et al. Among authors: chakraborty p. Oncotarget. 2020 Jul 7;11(27):2611-2624. doi: 10.18632/oncotarget.27651. eCollection 2020 Jul 7. Oncotarget. 2020. PMID: 32676163 Free PMC article.

6

Single-Cell RNA-seq Identifies Cell Subsets in Human Placenta That Highly Expresses Factors Driving Pathogenesis of SARS-CoV-2.

Ashary N, Bhide A, Chakraborty P, Colaco S, Mishra A, Chhabria K, Jolly MK, Modi D. Ashary N, et al. Among authors: chakraborty p. Front Cell Dev Biol. 2020 Aug 19;8:783. doi: 10.3389/fcell.2020.00783. eCollection 2020. Front Cell Dev Biol. 2020. PMID: 32974340 Free PMC article.

7

Gene expression profiles of inflammatory breast cancer reveal high heterogeneity across the epithelial-hybrid-mesenchymal spectrum.

Chakraborty P, George JT, Woodward WA, Levine H, Jolly MK. Chakraborty P, et al. Transl Oncol. 2021 Apr;14(4):101026. doi: 10.1016/j.tranon.2021.101026. Epub 2021 Jan 31. Transl Oncol. 2021. PMID: 33535154 Free PMC article.

8

A Theoretical Approach to Coupling the Epithelial-Mesenchymal Transition (EMT) to Extracellular Matrix (ECM) Stiffness via LOXL2.

Deng Y, Chakraborty P, Jolly MK, Levine H. Deng Y, et al. Among authors: chakraborty p. Cancers (Basel). 2021 Mar 31;13(7):1609. doi: 10.3390/cancers13071609. Cancers (Basel). 2021. PMID: 33807227 Free PMC article.

9

Calcium signaling induces a partial EMT.

Norgard RJ, Pitarresi JR, Maddipati R, Aiello-Couzo NM, Balli D, Li J, Yamazoe T, Wengyn MD, Millstein ID, Folkert IW, Rosario-Berrios DN, Kim IK, Bassett JB, Payne R, Berry CT, Feng X, Sun K, Cioffi M, Chakraborty P, Jolly MK, Gutkind JS, Lyden D, Freedman BD, Foskett JK, Rustgi AK, Stanger BZ. Norgard RJ, et al. Among authors: chakraborty p. EMBO Rep. 2021 Sep 6;22(9):e51872. doi: 10.15252/embr.202051872. Epub 2021 Jul 29. EMBO Rep. 2021. PMID: 34324787 Free PMC article.

10

CTCF Expression and Dynamic Motif Accessibility Modulates Epithelial-Mesenchymal Gene Expression.

Johnson KS, Hussein S, Chakraborty P, Muruganantham A, Mikhail S, Gonzalez G, Song S, Jolly MK, Toneff MJ, Benton ML, Lin YC, Taube JH. Johnson KS, et al. Among authors: chakraborty p. Cancers (Basel). 2022 Jan 1;14(1):209. doi: 10.3390/cancers14010209. Cancers (Basel). 2022. PMID: 35008373 Free PMC article.

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