Kim S - Search Results

1

Deep hierarchical embedding for simultaneous modeling of GPCR proteins in a unified metric space.

Lee T, Lee S, Kang M, Kim S. Lee T, et al. Among authors: kim s. Sci Rep. 2021 May 5;11(1):9543. doi: 10.1038/s41598-021-88623-8. Sci Rep. 2021. PMID: 33953216 Free PMC article.

2

Efficiency of methylated DNA immunoprecipitation bisulphite sequencing for whole-genome DNA methylation analysis.

Jeong HM, Lee S, Chae H, Kim R, Kwon MJ, Oh E, Choi YL, Kim S, Shin YK. Jeong HM, et al. Among authors: kim r, kim s. Epigenomics. 2016 Aug;8(8):1061-77. doi: 10.2217/epi-2016-0038. Epub 2016 Jun 8. Epigenomics. 2016. PMID: 27266718 Free article.

3

BioVLAB-mCpG-SNP-EXPRESS: A system for multi-level and multi-perspective analysis and exploration of DNA methylation, sequence variation (SNPs), and gene expression from multi-omics data.

Chae H, Lee S, Seo S, Jung D, Chang H, Nephew KP, Kim S. Chae H, et al. Among authors: kim s. Methods. 2016 Dec 1;111:64-71. doi: 10.1016/j.ymeth.2016.07.019. Epub 2016 Jul 28. Methods. 2016. PMID: 27477210

4

Measuring intratumor heterogeneity by network entropy using RNA-seq data.

Park Y, Lim S, Nam JW, Kim S. Park Y, et al. Among authors: kim s. Sci Rep. 2016 Nov 24;6:37767. doi: 10.1038/srep37767. Sci Rep. 2016. PMID: 27883053 Free PMC article.

5

Subtype-specific CpG island shore methylation and mutation patterns in 30 breast cancer cell lines.

Chae H, Lee S, Nephew KP, Kim S. Chae H, et al. Among authors: kim s. BMC Syst Biol. 2016 Dec 23;10(Suppl 4):116. doi: 10.1186/s12918-016-0356-2. BMC Syst Biol. 2016. PMID: 28155687 Free PMC article.

6

PINTnet: construction of condition-specific pathway interaction network by computing shortest paths on weighted PPI.

Moon JH, Lim S, Jo K, Lee S, Seo S, Kim S. Moon JH, et al. Among authors: kim s. BMC Syst Biol. 2017 Mar 14;11(Suppl 2):15. doi: 10.1186/s12918-017-0387-3. BMC Syst Biol. 2017. PMID: 28361687 Free PMC article.

7

MIDAS: Mining differentially activated subpaths of KEGG pathways from multi-class RNA-seq data.

Lee S, Park Y, Kim S. Lee S, et al. Among authors: kim s. Methods. 2017 Jul 15;124:13-24. doi: 10.1016/j.ymeth.2017.05.026. Epub 2017 Jun 1. Methods. 2017. PMID: 28579402 Free article.

8

In silico experiment system for testing hypothesis on gene functions using three condition specific biological networks.

Lee CJ, Kang D, Lee S, Lee S, Kang J, Kim S. Lee CJ, et al. Among authors: kim s. Methods. 2018 Aug 1;145:10-15. doi: 10.1016/j.ymeth.2018.05.003. Epub 2018 May 25. Methods. 2018. PMID: 29758273

9

DeepFam: deep learning based alignment-free method for protein family modeling and prediction.

Seo S, Oh M, Park Y, Kim S. Seo S, et al. Among authors: kim s. Bioinformatics. 2018 Jul 1;34(13):i254-i262. doi: 10.1093/bioinformatics/bty275. Bioinformatics. 2018. PMID: 29949966 Free PMC article.

10

Comprehensive and critical evaluation of individualized pathway activity measurement tools on pan-cancer data.

Lim S, Lee S, Jung I, Rhee S, Kim S. Lim S, et al. Among authors: kim s. Brief Bioinform. 2020 Jan 17;21(1):36-46. doi: 10.1093/bib/bby097. Brief Bioinform. 2020. PMID: 30462155

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