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Page 1
Training Infrastructure as a Service.
Rasche H, Hyde C, Davis J, Gladman S, Coraor N, Bretaudeau A, Cuccuru G, Bacon W, Serrano-Solano B, Hillman-Jackson J, Hiltemann S, Zhou M, Grüning B, Stubbs A. Rasche H, et al. Among authors: gruning b. Gigascience. 2022 Dec 28;12:giad048. doi: 10.1093/gigascience/giad048. Epub 2023 Jul 3. Gigascience. 2022. PMID: 37395629 Free PMC article.
"Be sustainable": EOSC-Life recommendations for implementation of FAIR principles in life science data handling.
David R, Rybina A, Burel JM, Heriche JK, Audergon P, Boiten JW, Coppens F, Crockett S, Exter K, Fahrner S, Fratelli M, Goble C, Gormanns P, Grantner T, Grüning B, Gurwitz KT, Hancock JM, Harmse H, Holub P, Juty N, Karnbach G, Karoune E, Keppler A, Klemeier J, Lancelotti C, Legras JL, Lister AL, Longo DL, Ludwig R, Madon B, Massimi M, Matser V, Matteoni R, Mayrhofer MT, Ohmann C, Panagiotopoulou M, Parkinson H, Perseil I, Pfander C, Pieruschka R, Raess M, Rauber A, Richard AS, Romano P, Rosato A, Sánchez-Pla A, Sansone SA, Sarkans U, Serrano-Solano B, Tang J, Tanoli Z, Tedds J, Wagener H, Weise M, Westerhoff HV, Wittner R, Ewbank J, Blomberg N, Gribbon P. David R, et al. Among authors: gruning b. EMBO J. 2023 Dec 1;42(23):e115008. doi: 10.15252/embj.2023115008. Epub 2023 Nov 15. EMBO J. 2023. PMID: 37964598 Free PMC article.
PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research.
Weil HL, Schneider K, Tschöpe M, Bauer J, Maus O, Frey K, Brilhaus D, Martins Rodrigues C, Doniparthi G, Wetzels F, Lukasczyk J, Kranz A, Grüning B, Zimmer D, Deßloch S, von Suchodoletz D, Usadel B, Garth C, Mühlhaus T. Weil HL, et al. Among authors: gruning b. Plant J. 2023 Nov;116(4):974-988. doi: 10.1111/tpj.16474. Epub 2023 Oct 11. Plant J. 2023. PMID: 37818860 Free article.
NCBI BLAST+ integrated into Galaxy.
Cock PJ, Chilton JM, Grüning B, Johnson JE, Soranzo N. Cock PJ, et al. Among authors: gruning b. Gigascience. 2015 Aug 25;4:39. doi: 10.1186/s13742-015-0080-7. eCollection 2015. Gigascience. 2015. PMID: 26336600 Free PMC article.
An Accessible Proteogenomics Informatics Resource for Cancer Researchers.
Chambers MC, Jagtap PD, Johnson JE, McGowan T, Kumar P, Onsongo G, Guerrero CR, Barsnes H, Vaudel M, Martens L, Grüning B, Cooke IR, Heydarian M, Reddy KL, Griffin TJ. Chambers MC, et al. Among authors: gruning b. Cancer Res. 2017 Nov 1;77(21):e43-e46. doi: 10.1158/0008-5472.CAN-17-0331. Cancer Res. 2017. PMID: 29092937 Free PMC article.
Community-Driven Data Analysis Training for Biology.
Batut B, Hiltemann S, Bagnacani A, Baker D, Bhardwaj V, Blank C, Bretaudeau A, Brillet-Guéguen L, Čech M, Chilton J, Clements D, Doppelt-Azeroual O, Erxleben A, Freeberg MA, Gladman S, Hoogstrate Y, Hotz HR, Houwaart T, Jagtap P, Larivière D, Le Corguillé G, Manke T, Mareuil F, Ramírez F, Ryan D, Sigloch FC, Soranzo N, Wolff J, Videm P, Wolfien M, Wubuli A, Yusuf D; Galaxy Training Network; Taylor J, Backofen R, Nekrutenko A, Grüning B. Batut B, et al. Among authors: gruning b. Cell Syst. 2018 Jun 27;6(6):752-758.e1. doi: 10.1016/j.cels.2018.05.012. Cell Syst. 2018. PMID: 29953864 Free PMC article.
Update on the moFF Algorithm for Label-Free Quantitative Proteomics.
Argentini A, Staes A, Grüning B, Mehta S, Easterly C, Griffin TJ, Jagtap P, Impens F, Martens L. Argentini A, et al. Among authors: gruning b. J Proteome Res. 2019 Feb 1;18(2):728-731. doi: 10.1021/acs.jproteome.8b00708. Epub 2018 Dec 14. J Proteome Res. 2019. PMID: 30511867
A rigorous evaluation of optimal peptide targets for MS-based clinical diagnostics of Coronavirus Disease 2019 (COVID-19).
Rajczewski AT, Mehta S, Nguyen DDA, Grüning BA, Johnson JE, McGowan T, Griffin TJ, Jagtap PD. Rajczewski AT, et al. medRxiv [Preprint]. 2021 Mar 1:2021.02.09.21251427. doi: 10.1101/2021.02.09.21251427. medRxiv. 2021. Update in: Clin Proteomics. 2021 May 10;18(1):15. doi: 10.1186/s12014-021-09321-1 PMID: 33688669 Free PMC article. Updated. Preprint.
128 results