Cairns BR - Search Results

1

CTCF looping is established during gastrulation in medaka embryos.

Nakamura R, Motai Y, Kumagai M, Wike CL, Nishiyama H, Nakatani Y, Durand NC, Kondo K, Kondo T, Tsukahara T, Shimada A, Cairns BR, Aiden EL, Morishita S, Takeda H. Nakamura R, et al. Among authors: cairns br. Genome Res. 2021 Jun;31(6):968-980. doi: 10.1101/gr.269951.120. Epub 2021 May 18. Genome Res. 2021. PMID: 34006570 Free PMC article.

2

Genes for embryo development are packaged in blocks of multivalent chromatin in zebrafish sperm.

Wu SF, Zhang H, Cairns BR. Wu SF, et al. Among authors: cairns br. Genome Res. 2011 Apr;21(4):578-89. doi: 10.1101/gr.113167.110. Epub 2011 Mar 7. Genome Res. 2011. PMID: 21383318 Free PMC article.

3

Conserved roles of mouse DUX and human DUX4 in activating cleavage-stage genes and MERVL/HERVL retrotransposons.

Hendrickson PG, Doráis JA, Grow EJ, Whiddon JL, Lim JW, Wike CL, Weaver BD, Pflueger C, Emery BR, Wilcox AL, Nix DA, Peterson CM, Tapscott SJ, Carrell DT, Cairns BR. Hendrickson PG, et al. Among authors: cairns br. Nat Genet. 2017 Jun;49(6):925-934. doi: 10.1038/ng.3844. Epub 2017 May 1. Nat Genet. 2017. PMID: 28459457 Free PMC article.

4

Chromatin and Single-Cell RNA-Seq Profiling Reveal Dynamic Signaling and Metabolic Transitions during Human Spermatogonial Stem Cell Development.

Guo J, Grow EJ, Yi C, Mlcochova H, Maher GJ, Lindskog C, Murphy PJ, Wike CL, Carrell DT, Goriely A, Hotaling JM, Cairns BR. Guo J, et al. Among authors: cairns br. Cell Stem Cell. 2017 Oct 5;21(4):533-546.e6. doi: 10.1016/j.stem.2017.09.003. Cell Stem Cell. 2017. PMID: 28985528 Free PMC article.

5

Placeholder Nucleosomes Underlie Germline-to-Embryo DNA Methylation Reprogramming.

Murphy PJ, Wu SF, James CR, Wike CL, Cairns BR. Murphy PJ, et al. Among authors: cairns br. Cell. 2018 Feb 22;172(5):993-1006.e13. doi: 10.1016/j.cell.2018.01.022. Epub 2018 Feb 15. Cell. 2018. PMID: 29456083 Free article.

6

Genome-wide reconstitution of chromatin transactions reveals that RSC preferentially disrupts H2AZ-containing nucleosomes.

Cakiroglu A, Clapier CR, Ehrensberger AH, Darbo E, Cairns BR, Luscombe NM, Svejstrup JQ. Cakiroglu A, et al. Among authors: cairns br. Genome Res. 2019 Jun;29(6):988-998. doi: 10.1101/gr.243139.118. Epub 2019 May 16. Genome Res. 2019. PMID: 31097474 Free PMC article.

7

Chromatin architecture transitions from zebrafish sperm through early embryogenesis.

Wike CL, Guo Y, Tan M, Nakamura R, Shaw DK, Díaz N, Whittaker-Tademy AF, Durand NC, Aiden EL, Vaquerizas JM, Grunwald D, Takeda H, Cairns BR. Wike CL, et al. Among authors: cairns br. Genome Res. 2021 Jun;31(6):981-994. doi: 10.1101/gr.269860.120. Epub 2021 May 18. Genome Res. 2021. PMID: 34006569 Free PMC article.

8

Establishment of developmental gene silencing by ordered polycomb complex recruitment in early zebrafish embryos.

Hickey GJ, Wike CL, Nie X, Guo Y, Tan M, Murphy PJ, Cairns BR. Hickey GJ, et al. Among authors: cairns br. Elife. 2022 Jan 4;11:e67738. doi: 10.7554/eLife.67738. Elife. 2022. PMID: 34982026 Free PMC article.

9

The adult human testis transcriptional cell atlas.

Guo J, Grow EJ, Mlcochova H, Maher GJ, Lindskog C, Nie X, Guo Y, Takei Y, Yun J, Cai L, Kim R, Carrell DT, Goriely A, Hotaling JM, Cairns BR. Guo J, et al. Among authors: cairns br. Cell Res. 2018 Dec;28(12):1141-1157. doi: 10.1038/s41422-018-0099-2. Epub 2018 Oct 12. Cell Res. 2018. PMID: 30315278 Free PMC article.

10

Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization.

D'Orazio FM, Balwierz PJ, González AJ, Guo Y, Hernández-Rodríguez B, Wheatley L, Jasiulewicz A, Hadzhiev Y, Vaquerizas JM, Cairns B, Lenhard B, Müller F. D'Orazio FM, et al. Dev Cell. 2021 Mar 8;56(5):641-656.e5. doi: 10.1016/j.devcel.2021.02.007. Epub 2021 Mar 1. Dev Cell. 2021. PMID: 33651978 Free PMC article.

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