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Enhancing CRISPR-Cas9 gRNA efficiency prediction by data integration and deep learning.
Xiang X, Corsi GI, Anthon C, Qu K, Pan X, Liang X, Han P, Dong Z, Liu L, Zhong J, Ma T, Wang J, Zhang X, Jiang H, Xu F, Liu X, Xu X, Wang J, Yang H, Bolund L, Church GM, Lin L, Gorodkin J, Luo Y. Xiang X, et al. Among authors: xu f, xu x. Nat Commun. 2021 May 28;12(1):3238. doi: 10.1038/s41467-021-23576-0. Nat Commun. 2021. PMID: 34050182 Free PMC article.
Deep sequencing of the MHC region in the Chinese population contributes to studies of complex disease.
Zhou F, Cao H, Zuo X, Zhang T, Zhang X, Liu X, Xu R, Chen G, Zhang Y, Zheng X, Jin X, Gao J, Mei J, Sheng Y, Li Q, Liang B, Shen J, Shen C, Jiang H, Zhu C, Fan X, Xu F, Yue M, Yin X, Ye C, Zhang C, Liu X, Yu L, Wu J, Chen M, Zhuang X, Tang L, Shao H, Wu L, Li J, Xu Y, Zhang Y, Zhao S, Wang Y, Li G, Xu H, Zeng L, Wang J, Bai M, Chen Y, Chen W, Kang T, Wu Y, Xu X, Zhu Z, Cui Y, Wang Z, Yang C, Wang P, Xiang L, Chen X, Zhang A, Gao X, Zhang F, Xu J, Zheng M, Zheng J, Zhang J, Yu X, Li Y, Yang S, Yang H, Wang J, Liu J, Hammarström L, Sun L, Wang J, Zhang X. Zhou F, et al. Among authors: xu r, xu f, xu h, xu x, xu y, xu j. Nat Genet. 2016 Jul;48(7):740-6. doi: 10.1038/ng.3576. Epub 2016 May 23. Nat Genet. 2016. PMID: 27213287
Patient iPSC-Derived Neurons for Disease Modeling of Frontotemporal Dementia with Mutation in CHMP2B.
Zhang Y, Schmid B, Nikolaisen NK, Rasmussen MA, Aldana BI, Agger M, Calloe K, Stummann TC, Larsen HM, Nielsen TT, Huang J, Xu F, Liu X, Bolund L, Meyer M, Bak LK, Waagepetersen HS, Luo Y, Nielsen JE; FReJA Consortium; Holst B, Clausen C, Hyttel P, Freude KK. Zhang Y, et al. Among authors: xu f. Stem Cell Reports. 2017 Mar 14;8(3):648-658. doi: 10.1016/j.stemcr.2017.01.012. Epub 2017 Feb 16. Stem Cell Reports. 2017. PMID: 28216144 Free PMC article.
BS-virus-finder: virus integration calling using bisulfite sequencing data.
Gao S, Hu X, Xu F, Gao C, Xiong K, Zhao X, Chen H, Zhao S, Wang M, Fu D, Zhao X, Bai J, Mao L, Li B, Wu S, Wang J, Li S, Yang H, Bolund L, Pedersen CNS. Gao S, et al. Among authors: xu f. Gigascience. 2018 Jan 1;7(1):1-7. doi: 10.1093/gigascience/gix123. Gigascience. 2018. PMID: 29267855 Free PMC article.
Central and Peripheral Nervous System Progenitors Derived from Human Pluripotent Stem Cells Reveal a Unique Temporal and Cell-Type Specific Expression of PMCAs.
Chen M, Laursen SH, Habekost M, Knudsen CH, Buchholdt SH, Huang J, Xu F, Liu X, Bolund L, Luo Y, Nissen P, Febbraro F, Denham M. Chen M, et al. Among authors: xu f. Front Cell Dev Biol. 2018 Feb 6;6:5. doi: 10.3389/fcell.2018.00005. eCollection 2018. Front Cell Dev Biol. 2018. PMID: 29468158 Free PMC article.
Genome-wide determination of on-target and off-target characteristics for RNA-guided DNA methylation by dCas9 methyltransferases.
Lin L, Liu Y, Xu F, Huang J, Daugaard TF, Petersen TS, Hansen B, Ye L, Zhou Q, Fang F, Yang L, Li S, Fløe L, Jensen KT, Shrock E, Chen F, Yang H, Wang J, Liu X, Xu X, Bolund L, Nielsen AL, Luo Y. Lin L, et al. Among authors: xu f, xu x. Gigascience. 2018 Mar 1;7(3):1-19. doi: 10.1093/gigascience/giy011. Gigascience. 2018. PMID: 29635374 Free PMC article.
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