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Rapid feedback on hospital onset SARS-CoV-2 infections combining epidemiological and sequencing data.
Stirrup O, Hughes J, Parker M, Partridge DG, Shepherd JG, Blackstone J, Coll F, Keeley A, Lindsey BB, Marek A, Peters C, Singer JB; COVID-19 Genomics UK (COG-UK) consortium; Tamuri A, de Silva TI, Thomson EC, Breuer J. Stirrup O, et al. Among authors: thomson ec. Elife. 2021 Jun 29;10:e65828. doi: 10.7554/eLife.65828. Elife. 2021. PMID: 34184637 Free PMC article.
Reply: To PMID 24797101.
Abdelrahman T, Hughes J, Main J, McLauchlan J, Thursz M, Thomson E. Abdelrahman T, et al. Hepatology. 2015 Apr;61(4):1438. doi: 10.1002/hep.27393. Hepatology. 2015. PMID: 25147121 Free PMC article. No abstract available.
Late Ebola virus relapse causing meningoencephalitis: a case report.
Jacobs M, Rodger A, Bell DJ, Bhagani S, Cropley I, Filipe A, Gifford RJ, Hopkins S, Hughes J, Jabeen F, Johannessen I, Karageorgopoulos D, Lackenby A, Lester R, Liu RS, MacConnachie A, Mahungu T, Martin D, Marshall N, Mepham S, Orton R, Palmarini M, Patel M, Perry C, Peters SE, Porter D, Ritchie D, Ritchie ND, Seaton RA, Sreenu VB, Templeton K, Warren S, Wilkie GS, Zambon M, Gopal R, Thomson EC. Jacobs M, et al. Among authors: thomson ec. Lancet. 2016 Jul 30;388(10043):498-503. doi: 10.1016/S0140-6736(16)30386-5. Epub 2016 May 18. Lancet. 2016. PMID: 27209148 Free PMC article.
Comparison of Next-Generation Sequencing Technologies for Comprehensive Assessment of Full-Length Hepatitis C Viral Genomes.
Thomson E, Ip CL, Badhan A, Christiansen MT, Adamson W, Ansari MA, Bibby D, Breuer J, Brown A, Bowden R, Bryant J, Bonsall D, Da Silva Filipe A, Hinds C, Hudson E, Klenerman P, Lythgow K, Mbisa JL, McLauchlan J, Myers R, Piazza P, Roy S, Trebes A, Sreenu VB, Witteveldt J; STOP-HCV Consortium; Barnes E, Simmonds P. Thomson E, et al. J Clin Microbiol. 2016 Oct;54(10):2470-84. doi: 10.1128/JCM.00330-16. Epub 2016 Jul 6. J Clin Microbiol. 2016. PMID: 27385709 Free PMC article.
Highly Diverse Hepatitis C Strains Detected in Sub-Saharan Africa Have Unknown Susceptibility to Direct-Acting Antiviral Treatments.
Davis C, Mgomella GS, da Silva Filipe A, Frost EH, Giroux G, Hughes J, Hogan C, Kaleebu P, Asiki G, McLauchlan J, Niebel M, Ocama P, Pomila C, Pybus OG, Pépin J, Simmonds P, Singer JB, Sreenu VB, Wekesa C, Young EH, Murphy DG, Sandhu M, Thomson EC. Davis C, et al. Among authors: thomson ec. Hepatology. 2019 Apr;69(4):1426-1441. doi: 10.1002/hep.30342. Epub 2019 Mar 22. Hepatology. 2019. PMID: 30387174 Free PMC article.
GLUE: a flexible software system for virus sequence data.
Singer JB, Thomson EC, McLauchlan J, Hughes J, Gifford RJ. Singer JB, et al. Among authors: thomson ec. BMC Bioinformatics. 2018 Dec 18;19(1):532. doi: 10.1186/s12859-018-2459-9. BMC Bioinformatics. 2018. PMID: 30563445 Free PMC article.
202 results