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RIP-chip enrichment analysis.
Erhard F, Dölken L, Zimmer R. Erhard F, et al. Among authors: dolken l. Bioinformatics. 2013 Jan 1;29(1):77-83. doi: 10.1093/bioinformatics/bts631. Epub 2012 Oct 26. Bioinformatics. 2013. PMID: 23104891
Widespread context dependency of microRNA-mediated regulation.
Erhard F, Haas J, Lieber D, Malterer G, Jaskiewicz L, Zavolan M, Dölken L, Zimmer R. Erhard F, et al. Among authors: dolken l. Genome Res. 2014 Jun;24(6):906-19. doi: 10.1101/gr.166702.113. Epub 2014 Mar 25. Genome Res. 2014. PMID: 24668909 Free PMC article.
Widespread disruption of host transcription termination in HSV-1 infection.
Rutkowski AJ, Erhard F, L'Hernault A, Bonfert T, Schilhabel M, Crump C, Rosenstiel P, Efstathiou S, Zimmer R, Friedel CC, Dölken L. Rutkowski AJ, et al. Among authors: l hernault a, dolken l. Nat Commun. 2015 May 20;6:7126. doi: 10.1038/ncomms8126. Nat Commun. 2015. PMID: 25989971 Free PMC article.
Improved Ribo-seq enables identification of cryptic translation events.
Erhard F, Halenius A, Zimmermann C, L'Hernault A, Kowalewski DJ, Weekes MP, Stevanovic S, Zimmer R, Dölken L. Erhard F, et al. Among authors: l hernault a, dolken l. Nat Methods. 2018 May;15(5):363-366. doi: 10.1038/nmeth.4631. Epub 2018 Mar 12. Nat Methods. 2018. PMID: 29529017 Free PMC article.
HSV-1-induced disruption of transcription termination resembles a cellular stress response but selectively increases chromatin accessibility downstream of genes.
Hennig T, Michalski M, Rutkowski AJ, Djakovic L, Whisnant AW, Friedl MS, Jha BA, Baptista MAP, L'Hernault A, Erhard F, Dölken L, Friedel CC. Hennig T, et al. Among authors: l hernault a, dolken l. PLoS Pathog. 2018 Mar 26;14(3):e1006954. doi: 10.1371/journal.ppat.1006954. eCollection 2018 Mar. PLoS Pathog. 2018. PMID: 29579120 Free PMC article.
Dissecting newly transcribed and old RNA using GRAND-SLAM.
Jürges C, Dölken L, Erhard F. Jürges C, et al. Among authors: dolken l. Bioinformatics. 2018 Jul 1;34(13):i218-i226. doi: 10.1093/bioinformatics/bty256. Bioinformatics. 2018. PMID: 29949974 Free PMC article.
scSLAM-seq reveals core features of transcription dynamics in single cells.
Erhard F, Baptista MAP, Krammer T, Hennig T, Lange M, Arampatzi P, Jürges CS, Theis FJ, Saliba AE, Dölken L. Erhard F, et al. Among authors: dolken l. Nature. 2019 Jul;571(7765):419-423. doi: 10.1038/s41586-019-1369-y. Epub 2019 Jul 10. Nature. 2019. PMID: 31292545
117 results