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AI-readiness for Biomedical Data: Bridge2AI Recommendations.
Clark T, Caufield H, Parker JA, Al Manir S, Amorim E, Eddy J, Gim N, Gow B, Goar W, Haendel M, Hansen JN, Harris N, Hermjakob H, Joachimiak M, Jordan G, Lee IH, McWeeney SK, Nebeker C, Nikolov M, Shaffer J, Sheffield N, Sheynkman G, Stevenson J, Chen JY, Mungall C, Wagner A, Kong SW, Ghosh SS, Patel B, Williams A, Munoz-Torres MC. Clark T, et al. Among authors: al manir s. bioRxiv [Preprint]. 2024 Nov 24:2024.10.23.619844. doi: 10.1101/2024.10.23.619844. bioRxiv. 2024. PMID: 39484409 Free PMC article. Preprint.
Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines.
Clark T, Mohan J, Schaffer L, Obernier K, Al Manir S, Churas CP, Dailamy A, Doctor Y, Forget A, Hansen JN, Hu M, Lenkiewicz J, Levinson MA, Marquez C, Nourreddine S, Niestroy J, Pratt D, Qian G, Thaker S, Bélisle-Pipon JC, Brandt C, Chen J, Ding Y, Fodeh S, Krogan N, Lundberg E, Mali P, Payne-Foster P, Ratcliffe S, Ravitsky V, Sali A, Schulz W, Ideker T. Clark T, et al. Among authors: al manir s. bioRxiv [Preprint]. 2024 May 24:2024.05.21.589311. doi: 10.1101/2024.05.21.589311. bioRxiv. 2024. PMID: 38826258 Free PMC article. Preprint.
FAIRSCAPE: a Framework for FAIR and Reproducible Biomedical Analytics.
Levinson MA, Niestroy J, Al Manir S, Fairchild K, Lake DE, Moorman JR, Clark T. Levinson MA, et al. Among authors: al manir s. Neuroinformatics. 2022 Jan;20(1):187-202. doi: 10.1007/s12021-021-09529-4. Epub 2021 Jul 15. Neuroinformatics. 2022. PMID: 34264488 Free PMC article.