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The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.
Galdzicki M, Clancy KP, Oberortner E, Pocock M, Quinn JY, Rodriguez CA, Roehner N, Wilson ML, Adam L, Anderson JC, Bartley BA, Beal J, Chandran D, Chen J, Densmore D, Endy D, Grünberg R, Hallinan J, Hillson NJ, Johnson JD, Kuchinsky A, Lux M, Misirli G, Peccoud J, Plahar HA, Sirin E, Stan GB, Villalobos A, Wipat A, Gennari JH, Myers CJ, Sauro HM. Galdzicki M, et al. Among authors: myers cj. Nat Biotechnol. 2014 Jun;32(6):545-50. doi: 10.1038/nbt.2891. Epub 2014 Jun 6. Nat Biotechnol. 2014. PMID: 24911500
Efficient analysis methods in synthetic biology.
Madsen C, Myers C, Roehner N, Winstead C, Zhang Z. Madsen C, et al. Methods Mol Biol. 2015;1244:217-57. doi: 10.1007/978-1-4939-1878-2_11. Methods Mol Biol. 2015. PMID: 25487100
The synthetic biology open language.
Myers C, Clancy K, Misirli G, Oberortner E, Pocock M, Quinn J, Roehner N, Sauro HM. Myers C, et al. Methods Mol Biol. 2015;1244:323-36. doi: 10.1007/978-1-4939-1878-2_16. Methods Mol Biol. 2015. PMID: 25487105
JSBML 1.0: providing a smorgasbord of options to encode systems biology models.
Rodriguez N, Thomas A, Watanabe L, Vazirabad IY, Kofia V, Gómez HF, Mittag F, Matthes J, Rudolph J, Wrzodek F, Netz E, Diamantikos A, Eichner J, Keller R, Wrzodek C, Fröhlich S, Lewis NE, Myers CJ, Le Novère N, Palsson BØ, Hucka M, Dräger A. Rodriguez N, et al. Among authors: myers cj. Bioinformatics. 2015 Oct 15;31(20):3383-6. doi: 10.1093/bioinformatics/btv341. Epub 2015 Jun 16. Bioinformatics. 2015. PMID: 26079347 Free PMC article.
SBOL Visual: A Graphical Language for Genetic Designs.
Quinn JY, Cox RS 3rd, Adler A, Beal J, Bhatia S, Cai Y, Chen J, Clancy K, Galdzicki M, Hillson NJ, Le Novère N, Maheshwari AJ, McLaughlin JA, Myers CJ, P U, Pocock M, Rodriguez C, Soldatova L, Stan GB, Swainston N, Wipat A, Sauro HM. Quinn JY, et al. Among authors: myers cj. PLoS Biol. 2015 Dec 3;13(12):e1002310. doi: 10.1371/journal.pbio.1002310. eCollection 2015 Dec. PLoS Biol. 2015. PMID: 26633141 Free PMC article.
145 results