McDonald D - Search Results

1

Nutritional Interventions and the Gut Microbiome in Children.

Mehta S, Huey SL, McDonald D, Knight R, Finkelstein JL. Mehta S, et al. Among authors: mcdonald d. Annu Rev Nutr. 2021 Oct 11;41:479-510. doi: 10.1146/annurev-nutr-021020-025755. Epub 2021 Jul 20. Annu Rev Nutr. 2021. PMID: 34283919

2

Forensic identification using skin bacterial communities.

Fierer N, Lauber CL, Zhou N, McDonald D, Costello EK, Knight R. Fierer N, et al. Among authors: mcdonald d. Proc Natl Acad Sci U S A. 2010 Apr 6;107(14):6477-81. doi: 10.1073/pnas.1000162107. Epub 2010 Mar 15. Proc Natl Acad Sci U S A. 2010. PMID: 20231444 Free PMC article.

3

Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins.

Hansen EE, Lozupone CA, Rey FE, Wu M, Guruge JL, Narra A, Goodfellow J, Zaneveld JR, McDonald DT, Goodrich JA, Heath AC, Knight R, Gordon JI. Hansen EE, et al. Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1(Suppl 1):4599-606. doi: 10.1073/pnas.1000071108. Epub 2011 Feb 11. Proc Natl Acad Sci U S A. 2011. PMID: 21317366 Free PMC article.

4

Structure, function and diversity of the healthy human microbiome.

Human Microbiome Project Consortium. Human Microbiome Project Consortium. Nature. 2012 Jun 13;486(7402):207-14. doi: 10.1038/nature11234. Nature. 2012. PMID: 22699609 Free PMC article.

5

A framework for human microbiome research.

Human Microbiome Project Consortium. Human Microbiome Project Consortium. Nature. 2012 Jun 13;486(7402):215-21. doi: 10.1038/nature11209. Nature. 2012. PMID: 22699610 Free PMC article.

6

Collaborative cloud-enabled tools allow rapid, reproducible biological insights.

Ragan-Kelley B, Walters WA, McDonald D, Riley J, Granger BE, Gonzalez A, Knight R, Perez F, Caporaso JG. Ragan-Kelley B, et al. Among authors: mcdonald d. ISME J. 2013 Mar;7(3):461-4. doi: 10.1038/ismej.2012.123. Epub 2012 Oct 25. ISME J. 2013. PMID: 23096404 Free PMC article. No abstract available.

7

From molecules to dynamic biological communities.

McDonald D, Vázquez-Baeza Y, Walters WA, Caporaso JG, Knight R. McDonald D, et al. Biol Philos. 2013 Mar;28(2):241-259. doi: 10.1007/s10539-013-9364-4. Epub 2013 Feb 5. Biol Philos. 2013. PMID: 23483075 Free PMC article.

8

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome.

McDonald D, Clemente JC, Kuczynski J, Rideout JR, Stombaugh J, Wendel D, Wilke A, Huse S, Hufnagle J, Meyer F, Knight R, Caporaso JG. McDonald D, et al. Gigascience. 2012 Jul 12;1(1):7. doi: 10.1186/2047-217X-1-7. Gigascience. 2012. PMID: 23587224 Free PMC article.

9

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences.

Langille MG, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, Clemente JC, Burkepile DE, Vega Thurber RL, Knight R, Beiko RG, Huttenhower C. Langille MG, et al. Among authors: mcdonald d. Nat Biotechnol. 2013 Sep;31(9):814-21. doi: 10.1038/nbt.2676. Epub 2013 Aug 25. Nat Biotechnol. 2013. PMID: 23975157 Free PMC article.

10

Comparison of the vaginal microbial communities in women with recurrent genital HSV receiving acyclovir intravaginal rings.

Ursell LK, Gunawardana M, Chang S, Mullen M, Moss JA, Herold BC, Keller MJ, McDonald D, González A, Knight R, Baum MM. Ursell LK, et al. Among authors: mcdonald d. Antiviral Res. 2014 Feb;102:87-94. doi: 10.1016/j.antiviral.2013.12.004. Epub 2013 Dec 19. Antiviral Res. 2014. PMID: 24361269 Free PMC article.

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