Ule J - Search Results

1

Ultraplex: A rapid, flexible, all-in-one fastq demultiplexer.

Wilkins OG, Capitanchik C, Luscombe NM, Ule J. Wilkins OG, et al. Among authors: ule j. Wellcome Open Res. 2021 Jun 7;6:141. doi: 10.12688/wellcomeopenres.16791.1. eCollection 2021. Wellcome Open Res. 2021. PMID: 34286104 Free PMC article.

2

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution.

König J, Zarnack K, Rot G, Curk T, Kayikci M, Zupan B, Turner DJ, Luscombe NM, Ule J. König J, et al. Among authors: ule j. Nat Struct Mol Biol. 2010 Jul;17(7):909-15. doi: 10.1038/nsmb.1838. Epub 2010 Jul 4. Nat Struct Mol Biol. 2010. PMID: 20601959 Free PMC article.

3

iCLIP predicts the dual splicing effects of TIA-RNA interactions.

Wang Z, Kayikci M, Briese M, Zarnack K, Luscombe NM, Rot G, Zupan B, Curk T, Ule J. Wang Z, et al. Among authors: ule j. PLoS Biol. 2010 Oct 26;8(10):e1000530. doi: 10.1371/journal.pbio.1000530. PLoS Biol. 2010. PMID: 21048981 Free PMC article.

4

iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.

Konig J, Zarnack K, Rot G, Curk T, Kayikci M, Zupan B, Turner DJ, Luscombe NM, Ule J. Konig J, et al. Among authors: ule j. J Vis Exp. 2011 Apr 30;(50):2638. doi: 10.3791/2638. J Vis Exp. 2011. PMID: 21559008 Free PMC article.

5

The RNA-binding protein Rrm4 is essential for efficient secretion of endochitinase Cts1.

Koepke J, Kaffarnik F, Haag C, Zarnack K, Luscombe NM, König J, Ule J, Kellner R, Begerow D, Feldbrügge M. Koepke J, et al. Among authors: ule j. Mol Cell Proteomics. 2011 Dec;10(12):M111.011213. doi: 10.1074/mcp.M111.011213. Epub 2011 Aug 1. Mol Cell Proteomics. 2011. PMID: 21808052 Free PMC article.

6

Protein-RNA interactions: new genomic technologies and perspectives.

König J, Zarnack K, Luscombe NM, Ule J. König J, et al. Among authors: ule j. Nat Rev Genet. 2012 Jan 18;13(2):77-83. doi: 10.1038/nrg3141. Nat Rev Genet. 2012. PMID: 22251872 Review.

7

Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements.

Zarnack K, König J, Tajnik M, Martincorena I, Eustermann S, Stévant I, Reyes A, Anders S, Luscombe NM, Ule J. Zarnack K, et al. Among authors: ule j. Cell. 2013 Jan 31;152(3):453-66. doi: 10.1016/j.cell.2012.12.023. Cell. 2013. PMID: 23374342 Free PMC article.

8

Control of a neuronal morphology program by an RNA-binding zinc finger protein, Unkempt.

Murn J, Zarnack K, Yang YJ, Durak O, Murphy EA, Cheloufi S, Gonzalez DM, Teplova M, Curk T, Zuber J, Patel DJ, Ule J, Luscombe NM, Tsai LH, Walsh CA, Shi Y. Murn J, et al. Among authors: ule j. Genes Dev. 2015 Mar 1;29(5):501-12. doi: 10.1101/gad.258483.115. Genes Dev. 2015. PMID: 25737280 Free PMC article.

9

hiCLIP reveals the in vivo atlas of mRNA secondary structures recognized by Staufen 1.

Sugimoto Y, Vigilante A, Darbo E, Zirra A, Militti C, D'Ambrogio A, Luscombe NM, Ule J. Sugimoto Y, et al. Among authors: ule j. Nature. 2015 Mar 26;519(7544):491-4. doi: 10.1038/nature14280. Epub 2015 Mar 18. Nature. 2015. PMID: 25799984 Free PMC article.

10

Intergenic Alu exonisation facilitates the evolution of tissue-specific transcript ends.

Tajnik M, Vigilante A, Braun S, Hänel H, Luscombe NM, Ule J, Zarnack K, König J. Tajnik M, et al. Among authors: ule j. Nucleic Acids Res. 2015 Dec 2;43(21):10492-505. doi: 10.1093/nar/gkv956. Epub 2015 Sep 22. Nucleic Acids Res. 2015. PMID: 26400176 Free PMC article.

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