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The best of both worlds: Combining lineage-specific and universal bait sets in target-enrichment hybridization reactions.
Hendriks KP, Mandáková T, Hay NM, Ly E, Hooft van Huysduynen A, Tamrakar R, Thomas SK, Toro-Núñez O, Pires JC, Nikolov LA, Koch MA, Windham MD, Lysak MA, Forest F, Mummenhoff K, Baker WJ, Lens F, Bailey CD. Hendriks KP, et al. Among authors: pires jc. Appl Plant Sci. 2021 Jul 7;9(7):10.1002/aps3.11438. doi: 10.1002/aps3.11438. eCollection 2021 Jul. Appl Plant Sci. 2021. PMID: 34336398 Free PMC article.
Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses.
Edger PP, Hall JC, Harkess A, Tang M, Coombs J, Mohammadin S, Schranz ME, Xiong Z, Leebens-Mack J, Meyers BC, Sytsma KJ, Koch MA, Al-Shehbaz IA, Pires JC. Edger PP, et al. Among authors: pires jc. Am J Bot. 2018 Mar;105(3):463-469. doi: 10.1002/ajb2.1040. Epub 2018 Mar 25. Am J Bot. 2018. PMID: 29574686 Free article.
Complementing model species with model clades.
Mabry ME, Abrahams RS, Al-Shehbaz IA, Baker WJ, Barak S, Barker MS, Barrett RL, Beric A, Bhattacharya S, Carey SB, Conant GC, Conran JG, Dassanayake M, Edger PP, Hall JC, Hao Y, Hendriks KP, Hibberd JM, King GJ, Kliebenstein DJ, Koch MA, Leitch IJ, Lens F, Lysak MA, McAlvay AC, McKibben MTW, Mercati F, Moore RC, Mummenhoff K, Murphy DJ, Nikolov LA, Pisias M, Roalson EH, Schranz ME, Thomas SK, Yu Q, Yocca A, Pires JC, Harkess AE. Mabry ME, et al. Among authors: pires jc. Plant Cell. 2024 May 1;36(5):1205-1226. doi: 10.1093/plcell/koad260. Plant Cell. 2024. PMID: 37824826 Free PMC article. Review.
An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions.
Haudry A, Platts AE, Vello E, Hoen DR, Leclercq M, Williamson RJ, Forczek E, Joly-Lopez Z, Steffen JG, Hazzouri KM, Dewar K, Stinchcombe JR, Schoen DJ, Wang X, Schmutz J, Town CD, Edger PP, Pires JC, Schumaker KS, Jarvis DE, Mandáková T, Lysak MA, van den Bergh E, Schranz ME, Harrison PM, Moses AM, Bureau TE, Wright SI, Blanchette M. Haudry A, et al. Among authors: pires jc. Nat Genet. 2013 Aug;45(8):891-8. doi: 10.1038/ng.2684. Epub 2013 Jun 30. Nat Genet. 2013. PMID: 23817568 Free article.
Plastid genomes reveal support for deep phylogenetic relationships and extensive rate variation among palms and other commelinid monocots.
Barrett CF, Baker WJ, Comer JR, Conran JG, Lahmeyer SC, Leebens-Mack JH, Li J, Lim GS, Mayfield-Jones DR, Perez L, Medina J, Pires JC, Santos C, Wm Stevenson D, Zomlefer WB, Davis JI. Barrett CF, et al. Among authors: pires jc. New Phytol. 2016 Jan;209(2):855-70. doi: 10.1111/nph.13617. Epub 2015 Sep 9. New Phytol. 2016. PMID: 26350789 Free article.
178 results