Li C - Search Results

1

Genome-wide sequencing as a first-tier screening test for short tandem repeat expansions.

Rajan-Babu IS, Peng JJ, Chiu R; IMAGINE Study; CAUSES Study; Li C, Mohajeri A, Dolzhenko E, Eberle MA, Birol I, Friedman JM. Rajan-Babu IS, et al. Among authors: li c. Genome Med. 2021 Aug 9;13(1):126. doi: 10.1186/s13073-021-00932-9. Genome Med. 2021. PMID: 34372915 Free PMC article.

2

Correction to: Genome-wide sequencing as a first-tier screening test for short tandem repeat expansions.

Rajan-Babu IS, Peng JJ, Chiu R; IMAGINE Study; CAUSES Study; Li C, Mohajeri A, Dolzhenko E, Eberle MA, Birol I, Friedman JM. Rajan-Babu IS, et al. Among authors: li c. Genome Med. 2021 Sep 13;13(1):151. doi: 10.1186/s13073-021-00961-4. Genome Med. 2021. PMID: 34517885 Free PMC article. No abstract available.

3

AMPlify: attentive deep learning model for discovery of novel antimicrobial peptides effective against WHO priority pathogens.

Li C, Sutherland D, Hammond SA, Yang C, Taho F, Bergman L, Houston S, Warren RL, Wong T, Hoang LMN, Cameron CE, Helbing CC, Birol I. Li C, et al. BMC Genomics. 2022 Jan 25;23(1):77. doi: 10.1186/s12864-022-08310-4. BMC Genomics. 2022. PMID: 35078402 Free PMC article.

4

Mining Amphibian and Insect Transcriptomes for Antimicrobial Peptide Sequences with rAMPage.

Lin D, Sutherland D, Aninta SI, Louie N, Nip KM, Li C, Yanai A, Coombe L, Warren RL, Helbing CC, Hoang LMN, Birol I. Lin D, et al. Among authors: li c. Antibiotics (Basel). 2022 Jul 15;11(7):952. doi: 10.3390/antibiotics11070952. Antibiotics (Basel). 2022. PMID: 35884206 Free PMC article.

5

Models and data of AMPlify: a deep learning tool for antimicrobial peptide prediction.

Li C, Warren RL, Birol I. Li C, et al. BMC Res Notes. 2023 Feb 2;16(1):11. doi: 10.1186/s13104-023-06279-1. BMC Res Notes. 2023. PMID: 36732807 Free PMC article.

6

De novo synthetic antimicrobial peptide design with a recurrent neural network.

Li C, Sutherland D, Richter A, Coombe L, Yanai A, Warren RL, Kotkoff M, Hof F, Hoang LMN, Helbing CC, Birol I. Li C, et al. Protein Sci. 2024 Aug;33(8):e5088. doi: 10.1002/pro.5088. Protein Sci. 2024. PMID: 38988311 Free PMC article.

7

Structure-aware deep learning model for peptide toxicity prediction.

Ebrahimikondori H, Sutherland D, Yanai A, Richter A, Salehi A, Li C, Coombe L, Kotkoff M, Warren RL, Birol I. Ebrahimikondori H, et al. Among authors: li c. Protein Sci. 2024 Jul;33(7):e5076. doi: 10.1002/pro.5076. Protein Sci. 2024. PMID: 39196703 Free PMC article.

8

Associating Biological Activity and Predicted Structure of Antimicrobial Peptides from Amphibians and Insects.

Richter A, Sutherland D, Ebrahimikondori H, Babcock A, Louie N, Li C, Coombe L, Lin D, Warren RL, Yanai A, Kotkoff M, Helbing CC, Hof F, Hoang LMN, Birol I. Richter A, et al. Among authors: li c. Antibiotics (Basel). 2022 Nov 27;11(12):1710. doi: 10.3390/antibiotics11121710. Antibiotics (Basel). 2022. PMID: 36551368 Free PMC article.

9

LRRC8A drives NADPH oxidase-mediated mitochondrial dysfunction and inflammation in allergic rhinitis.

Meng L, Hao D, Liu Y, Yu P, Luo J, Li C, Jiang T, Yu J, Zhang Q, Liu S, Shi L. Meng L, et al. Among authors: li c. J Transl Med. 2024 Nov 16;22(1):1034. doi: 10.1186/s12967-024-05853-w. J Transl Med. 2024. PMID: 39550567

10

C. elegans PPEF-type phosphatase (Retinal degeneration C ortholog) functions in diverse classes of cilia to regulate nematode behaviors.

Barbelanne M, Lu Y, Kumar K, Zhang X, Li C, Park K, Warner A, Xu XZS, Shaham S, Leroux MR. Barbelanne M, et al. Among authors: li c. Sci Rep. 2024 Nov 16;14(1):28347. doi: 10.1038/s41598-024-79057-z. Sci Rep. 2024. PMID: 39550471

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