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PharmacoDB 2.0: improving scalability and transparency of in vitro pharmacogenomics analysis.
Feizi N, Nair SK, Smirnov P, Beri G, Eeles C, Esfahani PN, Nakano M, Tkachuk D, Mammoliti A, Gorobets E, Mer AS, Lin E, Yu Y, Martin S, Hafner M, Haibe-Kains B. Feizi N, et al. Among authors: mammoliti a. Nucleic Acids Res. 2022 Jan 7;50(D1):D1348-D1357. doi: 10.1093/nar/gkab1084. Nucleic Acids Res. 2022. PMID: 34850112 Free PMC article.
Creating reproducible pharmacogenomic analysis pipelines.
Mammoliti A, Smirnov P, Safikhani Z, Ba-Alawi W, Haibe-Kains B. Mammoliti A, et al. Sci Data. 2019 Sep 3;6(1):166. doi: 10.1038/s41597-019-0174-7. Sci Data. 2019. PMID: 31481707 Free PMC article.
Orchestrating and sharing large multimodal data for transparent and reproducible research.
Mammoliti A, Smirnov P, Nakano M, Safikhani Z, Eeles C, Seo H, Nair SK, Mer AS, Smith I, Ho C, Beri G, Kusko R; Massive Analysis Quality Control (MAQC) Society Board of Directors; Lin E, Yu Y, Martin S, Hafner M, Haibe-Kains B. Mammoliti A, et al. Nat Commun. 2021 Oct 4;12(1):5797. doi: 10.1038/s41467-021-25974-w. Nat Commun. 2021. PMID: 34608132 Free PMC article.