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DNA methylation landscapes of 1538 breast cancers reveal a replication-linked clock, epigenomic instability and cis-regulation.
Batra RN, Lifshitz A, Vidakovic AT, Chin SF, Sati-Batra A, Sammut SJ, Provenzano E, Ali HR, Dariush A, Bruna A, Murphy L, Purushotham A, Ellis I, Green A, Garrett-Bakelman FE, Mason C, Melnick A, Aparicio SAJR, Rueda OM, Tanay A, Caldas C. Batra RN, et al. Among authors: lifshitz a. Nat Commun. 2021 Sep 13;12(1):5406. doi: 10.1038/s41467-021-25661-w. Nat Commun. 2021. PMID: 34518533 Free PMC article.
Cnidarian Cell Type Diversity and Regulation Revealed by Whole-Organism Single-Cell RNA-Seq.
Sebé-Pedrós A, Saudemont B, Chomsky E, Plessier F, Mailhé MP, Renno J, Loe-Mie Y, Lifshitz A, Mukamel Z, Schmutz S, Novault S, Steinmetz PRH, Spitz F, Tanay A, Marlow H. Sebé-Pedrós A, et al. Among authors: lifshitz a. Cell. 2018 May 31;173(6):1520-1534.e20. doi: 10.1016/j.cell.2018.05.019. Epub 2018 May 31. Cell. 2018. PMID: 29856957 Free article.
MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions.
Baran Y, Bercovich A, Sebe-Pedros A, Lubling Y, Giladi A, Chomsky E, Meir Z, Hoichman M, Lifshitz A, Tanay A. Baran Y, et al. Among authors: lifshitz a. Genome Biol. 2019 Oct 11;20(1):206. doi: 10.1186/s13059-019-1812-2. Genome Biol. 2019. PMID: 31604482 Free PMC article.
A single-embryo, single-cell time-resolved model for mouse gastrulation.
Mittnenzweig M, Mayshar Y, Cheng S, Ben-Yair R, Hadas R, Rais Y, Chomsky E, Reines N, Uzonyi A, Lumerman L, Lifshitz A, Mukamel Z, Orenbuch AH, Tanay A, Stelzer Y. Mittnenzweig M, et al. Among authors: lifshitz a. Cell. 2021 May 27;184(11):2825-2842.e22. doi: 10.1016/j.cell.2021.04.004. Epub 2021 Apr 30. Cell. 2021. PMID: 33932341 Free PMC article.
183 results