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TAF5L and TAF6L Maintain Self-Renewal of Embryonic Stem Cells via the MYC Regulatory Network.
Seruggia D, Oti M, Tripathi P, Canver MC, LeBlanc L, Di Giammartino DC, Bullen MJ, Nefzger CM, Sun YBY, Farouni R, Polo JM, Pinello L, Apostolou E, Kim J, Orkin SH, Das PP. Seruggia D, et al. Among authors: apostolou e. Mol Cell. 2019 Jun 20;74(6):1148-1163.e7. doi: 10.1016/j.molcel.2019.03.025. Epub 2019 Apr 17. Mol Cell. 2019. PMID: 31005419 Free PMC article.
KLF4 is involved in the organization and regulation of pluripotency-associated three-dimensional enhancer networks.
Di Giammartino DC, Kloetgen A, Polyzos A, Liu Y, Kim D, Murphy D, Abuhashem A, Cavaliere P, Aronson B, Shah V, Dephoure N, Stadtfeld M, Tsirigos A, Apostolou E. Di Giammartino DC, et al. Among authors: apostolou e. Nat Cell Biol. 2019 Oct;21(10):1179-1190. doi: 10.1038/s41556-019-0390-6. Epub 2019 Sep 23. Nat Cell Biol. 2019. PMID: 31548608 Free PMC article.
EpiMethylTag: simultaneous detection of ATAC-seq or ChIP-seq signals with DNA methylation.
Lhoumaud P, Sethia G, Izzo F, Sakellaropoulos T, Snetkova V, Vidal S, Badri S, Cornwell M, Di Giammartino DC, Kim KT, Apostolou E, Stadtfeld M, Landau DA, Skok J. Lhoumaud P, et al. Among authors: apostolou e. Genome Biol. 2019 Nov 21;20(1):248. doi: 10.1186/s13059-019-1853-6. Genome Biol. 2019. PMID: 31752933 Free PMC article.
Transcription factors: building hubs in the 3D space.
Di Giammartino DC, Polyzos A, Apostolou E. Di Giammartino DC, et al. Among authors: apostolou e. Cell Cycle. 2020 Oct;19(19):2395-2410. doi: 10.1080/15384101.2020.1805238. Epub 2020 Aug 12. Cell Cycle. 2020. PMID: 32783593 Free PMC article. Review.
Histone H1 loss drives lymphoma by disrupting 3D chromatin architecture.
Yusufova N, Kloetgen A, Teater M, Osunsade A, Camarillo JM, Chin CR, Doane AS, Venters BJ, Portillo-Ledesma S, Conway J, Phillip JM, Elemento O, Scott DW, Béguelin W, Licht JD, Kelleher NL, Staudt LM, Skoultchi AI, Keogh MC, Apostolou E, Mason CE, Imielinski M, Schlick T, David Y, Tsirigos A, Allis CD, Soshnev AA, Cesarman E, Melnick AM. Yusufova N, et al. Among authors: apostolou e. Nature. 2021 Jan;589(7841):299-305. doi: 10.1038/s41586-020-3017-y. Epub 2020 Dec 9. Nature. 2021. PMID: 33299181 Free PMC article.
H3K27ac bookmarking promotes rapid post-mitotic activation of the pluripotent stem cell program without impacting 3D chromatin reorganization.
Pelham-Webb B, Polyzos A, Wojenski L, Kloetgen A, Li J, Di Giammartino DC, Sakellaropoulos T, Tsirigos A, Core L, Apostolou E. Pelham-Webb B, et al. Among authors: apostolou e. Mol Cell. 2021 Apr 15;81(8):1732-1748.e8. doi: 10.1016/j.molcel.2021.02.032. Epub 2021 Mar 16. Mol Cell. 2021. PMID: 33730542 Free PMC article.
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