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Page 1
LoopGrafter: Visual Support for the Grafting Workflow of Protein Loops.
Opaleny F, Ulbrich P, Planas-Iglesias J, Byska J, Pinto GP, Bednar D, FurmanovA K, KozlikovA B. Opaleny F, et al. Among authors: furmanova k. IEEE Trans Vis Comput Graph. 2021 Sep 29;PP. doi: 10.1109/TVCG.2021.3114755. Online ahead of print. IEEE Trans Vis Comput Graph. 2021. PMID: 34587016
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories.
Jurcik A, Bednar D, Byska J, Marques SM, Furmanova K, Daniel L, Kokkonen P, Brezovsky J, Strnad O, Stourac J, Pavelka A, Manak M, Damborsky J, Kozlikova B. Jurcik A, et al. Among authors: furmanova k. Bioinformatics. 2018 Oct 15;34(20):3586-3588. doi: 10.1093/bioinformatics/bty386. Bioinformatics. 2018. PMID: 29741570 Free PMC article.
sMolBoxes: Dataflow Model for Molecular Dynamics Exploration.
Ulbrich P, Waldner M, Furmanova K, Marques SM, Bednar D, Kozlikova B, Byska J. Ulbrich P, et al. Among authors: furmanova k. IEEE Trans Vis Comput Graph. 2023 Jan;29(1):581-590. doi: 10.1109/TVCG.2022.3209411. Epub 2022 Dec 16. IEEE Trans Vis Comput Graph. 2023. PMID: 36155456
Visual Support for the Loop Grafting Workflow on Proteins.
Opaleny F, Ulbrich P, Planas-Iglesias J, Byska J, Stourac J, Bednar D, Furmanova K, Kozlikova B. Opaleny F, et al. Among authors: furmanova k. IEEE Trans Vis Comput Graph. 2024 Sep 10;PP. doi: 10.1109/TVCG.2024.3456401. Online ahead of print. IEEE Trans Vis Comput Graph. 2024. PMID: 39255099