Li JJ - Search Results

1

Clipper: p-value-free FDR control on high-throughput data from two conditions.

Ge X, Chen YE, Song D, McDermott M, Woyshner K, Manousopoulou A, Wang N, Li W, Wang LD, Li JJ. Ge X, et al. Among authors: li jj, li w. Genome Biol. 2021 Oct 11;22(1):288. doi: 10.1186/s13059-021-02506-9. Genome Biol. 2021. PMID: 34635147 Free PMC article.

2

Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data.

Li JJ, Huang H, Bickel PJ, Brenner SE. Li JJ, et al. Genome Res. 2014 Jul;24(7):1086-101. doi: 10.1101/gr.170100.113. Genome Res. 2014. PMID: 24985912 Free PMC article.

3

Epigenome overlap measure (EPOM) for comparing tissue/cell types based on chromatin states.

Li WV, Razaee ZS, Li JJ. Li WV, et al. Among authors: li jj. BMC Genomics. 2016 Jan 11;17 Suppl 1(Suppl 1):10. doi: 10.1186/s12864-015-2303-9. BMC Genomics. 2016. PMID: 26817822 Free PMC article.

4

NMFP: a non-negative matrix factorization based preselection method to increase accuracy of identifying mRNA isoforms from RNA-seq data.

Ye Y, Li JJ. Ye Y, et al. Among authors: li jj. BMC Genomics. 2016 Jan 11;17 Suppl 1(Suppl 1):11. doi: 10.1186/s12864-015-2304-8. BMC Genomics. 2016. PMID: 26818007 Free PMC article.

5

TROM: A Testing-Based Method for Finding Transcriptomic Similarity of Biological Samples.

Li WV, Chen Y, Li JJ. Li WV, et al. Among authors: li jj. Stat Biosci. 2017 Jun;9(1):105-136. doi: 10.1007/s12561-016-9163-y. Epub 2016 Aug 29. Stat Biosci. 2017. PMID: 28781712 Free PMC article.

6

An accurate and robust imputation method scImpute for single-cell RNA-seq data.

Li WV, Li JJ. Li WV, et al. Among authors: li jj. Nat Commun. 2018 Mar 8;9(1):997. doi: 10.1038/s41467-018-03405-7. Nat Commun. 2018. PMID: 29520097 Free PMC article.

7

MSIQ: JOINT MODELING OF MULTIPLE RNA-SEQ SAMPLES FOR ACCURATE ISOFORM QUANTIFICATION.

Li WV, Zhao A, Zhang S, Li JJ. Li WV, et al. Among authors: li jj. Ann Appl Stat. 2018 Mar;12(1):510-539. doi: 10.1214/17-AOAS1100. Epub 2018 Mar 9. Ann Appl Stat. 2018. PMID: 29731954 Free PMC article.

8

EpiAlign: an alignment-based bioinformatic tool for comparing chromatin state sequences.

Ge X, Zhang H, Xie L, Li WV, Kwon SB, Li JJ. Ge X, et al. Among authors: li wv, li jj. Nucleic Acids Res. 2019 Jul 26;47(13):e77. doi: 10.1093/nar/gkz287. Nucleic Acids Res. 2019. PMID: 31045217 Free PMC article.

9

Quantitative principles of cis-translational control by general mRNA sequence features in eukaryotes.

Li JJ, Chew GL, Biggin MD. Li JJ, et al. Genome Biol. 2019 Aug 9;20(1):162. doi: 10.1186/s13059-019-1761-9. Genome Biol. 2019. PMID: 31399036 Free PMC article.

10

Modeling and analysis of RNA-seq data: a review from a statistical perspective.

Li WV, Li JJ. Li WV, et al. Among authors: li jj. Quant Biol. 2018 Sep;6(3):195-209. doi: 10.1007/s40484-018-0144-7. Epub 2018 Aug 10. Quant Biol. 2018. PMID: 31456901 Free PMC article.

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