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Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing.
Tian L, Jabbari JS, Thijssen R, Gouil Q, Amarasinghe SL, Voogd O, Kariyawasam H, Du MRM, Schuster J, Wang C, Su S, Dong X, Law CW, Lucattini A, Prawer YDJ, Collar-Fernández C, Chung JD, Naim T, Chan A, Ly CH, Lynch GS, Ryall JG, Anttila CJA, Peng H, Anderson MA, Flensburg C, Majewski I, Roberts AW, Huang DCS, Clark MB, Ritchie ME. Tian L, et al. Among authors: law cw. Genome Biol. 2021 Nov 11;22(1):310. doi: 10.1186/s13059-021-02525-6. Genome Biol. 2021. PMID: 34763716 Free PMC article.
RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR.
Law CW, Alhamdoosh M, Su S, Dong X, Tian L, Smyth GK, Ritchie ME. Law CW, et al. F1000Res. 2016 Jun 17;5:ISCB Comm J-1408. doi: 10.12688/f1000research.9005.3. eCollection 2016. F1000Res. 2016. PMID: 27441086 Free PMC article.
Glimma: interactive graphics for gene expression analysis.
Su S, Law CW, Ah-Cann C, Asselin-Labat ML, Blewitt ME, Ritchie ME. Su S, et al. Among authors: law cw. Bioinformatics. 2017 Jul 1;33(13):2050-2052. doi: 10.1093/bioinformatics/btx094. Bioinformatics. 2017. PMID: 28203714 Free PMC article.
Easy and efficient ensemble gene set testing with EGSEA.
Alhamdoosh M, Law CW, Tian L, Sheridan JM, Ng M, Ritchie ME. Alhamdoosh M, et al. Among authors: law cw. F1000Res. 2017 Nov 14;6:2010. doi: 10.12688/f1000research.12544.1. eCollection 2017. F1000Res. 2017. PMID: 29333246 Free PMC article.
Covering all your bases: incorporating intron signal from RNA-seq data.
Lee S, Zhang AY, Su S, Ng AP, Holik AZ, Asselin-Labat ML, Ritchie ME, Law CW. Lee S, et al. Among authors: law cw. NAR Genom Bioinform. 2020 Sep 22;2(3):lqaa073. doi: 10.1093/nargab/lqaa073. eCollection 2020 Sep. NAR Genom Bioinform. 2020. PMID: 33575621 Free PMC article.
89 results