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Page 1
Global phylogeny of Treponema pallidum lineages reveals recent expansion and spread of contemporary syphilis.
Beale MA, Marks M, Cole MJ, Lee MK, Pitt R, Ruis C, Balla E, Crucitti T, Ewens M, Fernández-Naval C, Grankvist A, Guiver M, Kenyon CR, Khairullin R, Kularatne R, Arando M, Molini BJ, Obukhov A, Page EE, Petrovay F, Rietmeijer C, Rowley D, Shokoples S, Smit E, Sweeney EL, Taiaroa G, Vera JH, Wennerås C, Whiley DM, Williamson DA, Hughes G, Naidu P, Unemo M, Krajden M, Lukehart SA, Morshed MG, Fifer H, Thomson NR. Beale MA, et al. Among authors: thomson nr. Nat Microbiol. 2021 Dec;6(12):1549-1560. doi: 10.1038/s41564-021-01000-z. Epub 2021 Nov 24. Nat Microbiol. 2021. PMID: 34819643 Free PMC article.
Fitting the niche by genomic adaptation.
Thomson N, Bentley S, Holden M, Parkhill J. Thomson N, et al. Nat Rev Microbiol. 2003 Nov;1(2):92-3. doi: 10.1038/nrmicro756. Nat Rev Microbiol. 2003. PMID: 15035037
Chalk and cheese.
Crossman L, Cerdeño-Tárraga A, Thomson NR. Crossman L, et al. Among authors: thomson nr. Nat Rev Microbiol. 2004 Jul;2(7):528-9. doi: 10.1038/nrmicro932. Nat Rev Microbiol. 2004. PMID: 15248310 No abstract available.
Massive attack.
Thomson N, Cerdeño-Tárraga A, Bentley S. Thomson N, et al. Nat Rev Microbiol. 2005 Aug;3(8):586-7. doi: 10.1038/nrmicro1212. Nat Rev Microbiol. 2005. PMID: 16094740 Review. No abstract available.
The Swedish new variant of Chlamydia trachomatis: genome sequence, morphology, cell tropism and phenotypic characterization.
Unemo M, Seth-Smith HMB, Cutcliffe LT, Skilton RJ, Barlow D, Goulding D, Persson K, Harris SR, Kelly A, Bjartling C, Fredlund H, Olcén P, Thomson NR, Clarke IN. Unemo M, et al. Among authors: thomson nr. Microbiology (Reading). 2010 May;156(Pt 5):1394-1404. doi: 10.1099/mic.0.036830-0. Epub 2010 Jan 21. Microbiology (Reading). 2010. PMID: 20093289 Free PMC article.
Evidence for several waves of global transmission in the seventh cholera pandemic.
Mutreja A, Kim DW, Thomson NR, Connor TR, Lee JH, Kariuki S, Croucher NJ, Choi SY, Harris SR, Lebens M, Niyogi SK, Kim EJ, Ramamurthy T, Chun J, Wood JL, Clemens JD, Czerkinsky C, Nair GB, Holmgren J, Parkhill J, Dougan G. Mutreja A, et al. Among authors: thomson nr. Nature. 2011 Aug 24;477(7365):462-5. doi: 10.1038/nature10392. Nature. 2011. PMID: 21866102 Free PMC article.
Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing.
Harris SR, Clarke IN, Seth-Smith HM, Solomon AW, Cutcliffe LT, Marsh P, Skilton RJ, Holland MJ, Mabey D, Peeling RW, Lewis DA, Spratt BG, Unemo M, Persson K, Bjartling C, Brunham R, de Vries HJ, Morré SA, Speksnijder A, Bébéar CM, Clerc M, de Barbeyrac B, Parkhill J, Thomson NR. Harris SR, et al. Among authors: thomson nr. Nat Genet. 2012 Mar 11;44(4):413-9, S1. doi: 10.1038/ng.2214. Nat Genet. 2012. PMID: 22406642 Free PMC article.
Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe.
Holt KE, Baker S, Weill FX, Holmes EC, Kitchen A, Yu J, Sangal V, Brown DJ, Coia JE, Kim DW, Choi SY, Kim SH, da Silveira WD, Pickard DJ, Farrar JJ, Parkhill J, Dougan G, Thomson NR. Holt KE, et al. Among authors: thomson nr. Nat Genet. 2012 Sep;44(9):1056-9. doi: 10.1038/ng.2369. Epub 2012 Aug 5. Nat Genet. 2012. PMID: 22863732 Free PMC article.
Chlamydia trachomatis clinical isolates identified as tetracycline resistant do not exhibit resistance in vitro: whole-genome sequencing reveals a mutation in porB but no evidence for tetracycline resistance genes.
O'Neill CE, Seth-Smith HMB, Van Der Pol B, Harris SR, Thomson NR, Cutcliffe LT, Clarke IN. O'Neill CE, et al. Among authors: thomson nr. Microbiology (Reading). 2013 Apr;159(Pt 4):748-756. doi: 10.1099/mic.0.065391-0. Epub 2013 Feb 1. Microbiology (Reading). 2013. PMID: 23378575 Free article.
Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture.
Seth-Smith HM, Harris SR, Skilton RJ, Radebe FM, Golparian D, Shipitsyna E, Duy PT, Scott P, Cutcliffe LT, O'Neill C, Parmar S, Pitt R, Baker S, Ison CA, Marsh P, Jalal H, Lewis DA, Unemo M, Clarke IN, Parkhill J, Thomson NR. Seth-Smith HM, et al. Among authors: thomson nr. Genome Res. 2013 May;23(5):855-66. doi: 10.1101/gr.150037.112. Epub 2013 Mar 22. Genome Res. 2013. PMID: 23525359 Free PMC article.
359 results