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A k-mer based approach for classifying viruses without taxonomy identifies viral associations in human autism and plant microbiomes.
Garcia BJ, Simha R, Garvin M, Furches A, Jones P, Gazolla JGFM, Hyatt PD, Schadt CW, Pelletier D, Jacobson D. Garcia BJ, et al. Among authors: furches a. Comput Struct Biotechnol J. 2021 Oct 25;19:5911-5919. doi: 10.1016/j.csbj.2021.10.029. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 34849195 Free PMC article.
Plant Host-Associated Mechanisms for Microbial Selection.
Jones P, Garcia BJ, Furches A, Tuskan GA, Jacobson D. Jones P, et al. Among authors: furches a. Front Plant Sci. 2019 Jul 3;10:862. doi: 10.3389/fpls.2019.00862. eCollection 2019. Front Plant Sci. 2019. PMID: 31333701 Free PMC article. Review.
Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence.
Furches A, Kainer D, Weighill D, Large A, Jones P, Walker AM, Romero J, Gazolla JGFM, Joubert W, Shah M, Streich J, Ranjan P, Schmutz J, Sreedasyam A, Macaya-Sanz D, Zhao N, Martin MZ, Rao X, Dixon RA, DiFazio S, Tschaplinski TJ, Chen JG, Tuskan GA, Jacobson D. Furches A, et al. Front Plant Sci. 2019 Oct 8;10:1249. doi: 10.3389/fpls.2019.01249. eCollection 2019. Front Plant Sci. 2019. PMID: 31649710 Free PMC article.
Validation of a metabolite-GWAS network for Populus trichocarpa family 1 UDP-glycosyltransferases.
Saint-Vincent PMB, Furches A, Galanie S, Teixeira Prates E, Aldridge JL, Labbe A, Zhao N, Martin MZ, Ranjan P, Jones P, Kainer D, Kalluri UC, Chen JG, Muchero W, Jacobson DA, Tschaplinski TJ. Saint-Vincent PMB, et al. Among authors: furches a. Front Plant Sci. 2023 Jul 21;14:1210146. doi: 10.3389/fpls.2023.1210146. eCollection 2023. Front Plant Sci. 2023. PMID: 37546246 Free PMC article.
Metabolic engineering of Pseudomonas putida for increased polyhydroxyalkanoate production from lignin.
Salvachúa D, Rydzak T, Auwae R, De Capite A, Black BA, Bouvier JT, Cleveland NS, Elmore JR, Furches A, Huenemann JD, Katahira R, Michener WE, Peterson DJ, Rohrer H, Vardon DR, Beckham GT, Guss AM. Salvachúa D, et al. Among authors: furches a. Microb Biotechnol. 2020 May;13(3):813. doi: 10.1111/1751-7915.13547. Microb Biotechnol. 2020. PMID: 32237217 Free PMC article. No abstract available.
Genetic underpinnings of arthropod community distributions in Populus trichocarpa.
Simon SJ, Furches A, Chhetri H, Evans L, Abeyratne CR, Jones P, Wimp G, Macaya-Sanz D, Jacobson D, Tschaplinski TJ, Tuskan GA, DiFazio SP. Simon SJ, et al. Among authors: furches a. New Phytol. 2024 May;242(3):1307-1323. doi: 10.1111/nph.19660. Epub 2024 Mar 15. New Phytol. 2024. PMID: 38488269
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