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A k-mer based approach for classifying viruses without taxonomy identifies viral associations in human autism and plant microbiomes.
Garcia BJ, Simha R, Garvin M, Furches A, Jones P, Gazolla JGFM, Hyatt PD, Schadt CW, Pelletier D, Jacobson D. Garcia BJ, et al. Among authors: garvin m. Comput Struct Biotechnol J. 2021 Oct 25;19:5911-5919. doi: 10.1016/j.csbj.2021.10.029. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 34849195 Free PMC article.
Can exascale computing and explainable artificial intelligence applied to plant biology deliver on the United Nations sustainable development goals?
Streich J, Romero J, Gazolla JGFM, Kainer D, Cliff A, Prates ET, Brown JB, Khoury S, Tuskan GA, Garvin M, Jacobson D, Harfouche AL. Streich J, et al. Among authors: garvin m. Curr Opin Biotechnol. 2020 Feb;61:217-225. doi: 10.1016/j.copbio.2020.01.010. Epub 2020 Feb 18. Curr Opin Biotechnol. 2020. PMID: 32086132 Review.
NF-κB perturbation reveals unique immunomodulatory functions in Prx1+ fibroblasts that promote development of atopic dermatitis.
Ko KI, Merlet JJ, DerGarabedian BP, Zhen H, Suzuki-Horiuchi Y, Hedberg ML, Hu E, Nguyen AT, Prouty S, Alawi F, Walsh MC, Choi Y, Millar SE, Cliff A, Romero J, Garvin MR, Seykora JT, Jacobson D, Graves DT. Ko KI, et al. Sci Transl Med. 2022 Feb 2;14(630):eabj0324. doi: 10.1126/scitranslmed.abj0324. Epub 2022 Feb 2. Sci Transl Med. 2022. PMID: 35108061 Free PMC article.
Antiviral Strategies Against SARS-CoV-2: A Systems Biology Approach.
Prates ET, Garvin MR, Jones P, Miller JI, Sullivan KA, Cliff A, Gazolla JGFM, Shah MB, Walker AM, Lane M, Rentsch CT, Justice A, Pavicic M, Romero J, Jacobson D. Prates ET, et al. Among authors: garvin mr. Methods Mol Biol. 2022;2452:317-351. doi: 10.1007/978-1-0716-2111-0_19. Methods Mol Biol. 2022. PMID: 35554915
Structural and functional characterization of NEMO cleavage by SARS-CoV-2 3CLpro.
Hameedi MA, T Prates E, Garvin MR, Mathews II, Amos BK, Demerdash O, Bechthold M, Iyer M, Rahighi S, Kneller DW, Kovalevsky A, Irle S, Vuong VQ, Mitchell JC, Labbe A, Galanie S, Wakatsuki S, Jacobson D. Hameedi MA, et al. Among authors: garvin mr. Nat Commun. 2022 Sep 8;13(1):5285. doi: 10.1038/s41467-022-32922-9. Nat Commun. 2022. PMID: 36075915 Free PMC article.
187 results