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A k-mer based approach for classifying viruses without taxonomy identifies viral associations in human autism and plant microbiomes.
Garcia BJ, Simha R, Garvin M, Furches A, Jones P, Gazolla JGFM, Hyatt PD, Schadt CW, Pelletier D, Jacobson D. Garcia BJ, et al. Among authors: jacobson d. Comput Struct Biotechnol J. 2021 Oct 25;19:5911-5919. doi: 10.1016/j.csbj.2021.10.029. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 34849195 Free PMC article.
Transcript, protein and metabolite temporal dynamics in the CAM plant Agave.
Abraham PE, Yin H, Borland AM, Weighill D, Lim SD, De Paoli HC, Engle N, Jones PC, Agh R, Weston DJ, Wullschleger SD, Tschaplinski T, Jacobson D, Cushman JC, Hettich RL, Tuskan GA, Yang X. Abraham PE, et al. Among authors: jacobson d. Nat Plants. 2016 Nov 21;2:16178. doi: 10.1038/nplants.2016.178. Nat Plants. 2016. PMID: 27869799
Genus-Wide Assessment of Lignocellulose Utilization in the Extremely Thermophilic Genus Caldicellulosiruptor by Genomic, Pangenomic, and Metagenomic Analyses.
Lee LL, Blumer-Schuette SE, Izquierdo JA, Zurawski JV, Loder AJ, Conway JM, Elkins JG, Podar M, Clum A, Jones PC, Piatek MJ, Weighill DA, Jacobson DA, Adams MWW, Kelly RM. Lee LL, et al. Appl Environ Microbiol. 2018 Apr 16;84(9):e02694-17. doi: 10.1128/AEM.02694-17. Print 2018 May 1. Appl Environ Microbiol. 2018. PMID: 29475869 Free PMC article.
Defining the genetic components of callus formation: A GWAS approach.
Tuskan GA, Mewalal R, Gunter LE, Palla KJ, Carter K, Jacobson DA, Jones PC, Garcia BJ, Weighill DA, Hyatt PD, Yang Y, Zhang J, Reis N, Chen JG, Muchero W. Tuskan GA, et al. Among authors: jacobson da. PLoS One. 2018 Aug 17;13(8):e0202519. doi: 10.1371/journal.pone.0202519. eCollection 2018. PLoS One. 2018. PMID: 30118526 Free PMC article.
Multi-Phenotype Association Decomposition: Unraveling Complex Gene-Phenotype Relationships.
Weighill D, Jones P, Bleker C, Ranjan P, Shah M, Zhao N, Martin M, DiFazio S, Macaya-Sanz D, Schmutz J, Sreedasyam A, Tschaplinski T, Tuskan G, Jacobson D. Weighill D, et al. Among authors: jacobson d. Front Genet. 2019 May 10;10:417. doi: 10.3389/fgene.2019.00417. eCollection 2019. Front Genet. 2019. PMID: 31134130 Free PMC article.
940 results