Castro MAA - Search Results

1

TreeAndLeaf: an R/Bioconductor package for graphs and trees with focus on the leaves.

Cardoso MA, Rizzardi LEA, Kume LW, Groeneveld CS, Trefflich S, Morais DAA, Dalmolin RJS, Ponder BAJ, Meyer KB, Castro MAA. Cardoso MA, et al. Among authors: castro maa. Bioinformatics. 2022 Feb 7;38(5):1463-1464. doi: 10.1093/bioinformatics/btab819. Bioinformatics. 2022. PMID: 34864914

2

Evolutionary origins of human apoptosis and genome-stability gene networks.

Castro MA, Dalmolin RJ, Moreira JC, Mombach JC, de Almeida RM. Castro MA, et al. Nucleic Acids Res. 2008 Nov;36(19):6269-83. doi: 10.1093/nar/gkn636. Epub 2008 Oct 2. Nucleic Acids Res. 2008. PMID: 18832373 Free PMC article.

3

A systematic review of human antioxidant genes.

Gelain DP, Dalmolin RJ, Belau VL, Moreira JC, Klamt F, Castro MA. Gelain DP, et al. Front Biosci (Landmark Ed). 2009 Jan 1;14(12):4457-63. doi: 10.2741/3541. Front Biosci (Landmark Ed). 2009. PMID: 19273363 Free article. Review.

4

ViaComplex: software for landscape analysis of gene expression networks in genomic context.

Castro MA, Filho JL, Dalmolin RJ, Sinigaglia M, Moreira JC, Mombach JC, de Almeida RM. Castro MA, et al. Bioinformatics. 2009 Jun 1;25(11):1468-9. doi: 10.1093/bioinformatics/btp246. Epub 2009 Apr 15. Bioinformatics. 2009. PMID: 19369498

5

Towards a genome-wide transcriptogram: the Saccharomyces cerevisiae case.

Rybarczyk-Filho JL, Castro MA, Dalmolin RJ, Moreira JC, Brunnet LG, de Almeida RM. Rybarczyk-Filho JL, et al. Nucleic Acids Res. 2011 Apr;39(8):3005-16. doi: 10.1093/nar/gkq1269. Epub 2010 Dec 15. Nucleic Acids Res. 2011. PMID: 21169199 Free PMC article.

6

Evolutionary plasticity determination by orthologous groups distribution.

Dalmolin RJ, Castro MA, Rybarczyk Filho JL, Souza LH, de Almeida RM, Moreira JC. Dalmolin RJ, et al. Biol Direct. 2011 May 17;6:22. doi: 10.1186/1745-6150-6-22. Biol Direct. 2011. PMID: 21586164 Free PMC article.

7

RedeR: R/Bioconductor package for representing modular structures, nested networks and multiple levels of hierarchical associations.

Castro MA, Wang X, Fletcher MN, Meyer KB, Markowetz F. Castro MA, et al. Genome Biol. 2012 Apr 24;13(4):R29. doi: 10.1186/gb-2012-13-4-r29. Genome Biol. 2012. PMID: 22531049 Free PMC article.

8

Preferential duplication of intermodular hub genes: an evolutionary signature in eukaryotes genome networks.

Ferreira RM, Rybarczyk-Filho JL, Dalmolin RJ, Castro MA, Moreira JC, Brunnet LG, de Almeida RM. Ferreira RM, et al. PLoS One. 2013;8(2):e56579. doi: 10.1371/journal.pone.0056579. Epub 2013 Feb 26. PLoS One. 2013. PMID: 23468868 Free PMC article.

9

Master regulators of FGFR2 signalling and breast cancer risk.

Fletcher MN, Castro MA, Wang X, de Santiago I, O'Reilly M, Chin SF, Rueda OM, Caldas C, Ponder BA, Markowetz F, Meyer KB. Fletcher MN, et al. Nat Commun. 2013;4:2464. doi: 10.1038/ncomms3464. Nat Commun. 2013. PMID: 24043118 Free PMC article.

10

Regulators of genetic risk of breast cancer identified by integrative network analysis.

Castro MA, de Santiago I, Campbell TM, Vaughn C, Hickey TE, Ross E, Tilley WD, Markowetz F, Ponder BA, Meyer KB. Castro MA, et al. Nat Genet. 2016 Jan;48(1):12-21. doi: 10.1038/ng.3458. Epub 2015 Nov 30. Nat Genet. 2016. PMID: 26618344 Free PMC article.

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